Arabidopsis lyrata (lyrate rockcress): 9309554
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Entry
9309554 CDS
T01578
Name
(RefSeq) WD and tetratricopeptide repeats protein 1 isoform X2
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aly04121
]
9309554
Ubiquitin system [BR:
aly04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
9309554
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR75_1st
WDR55
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR35_TULP_N
Beta-prop_HPS5
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Ribophorin_II
TPR_14
TPR_19
TPR_2
Motif
Other DBs
NCBI-GeneID:
9309554
NCBI-ProteinID:
XP_002873486
UniProt:
D7M3K0
LinkDB
All DBs
Position
Unknown
AA seq
755 aa
AA seq
DB search
MENLSFHDGNIFNLLHTRSQDPSHEVDQRMQLHSSLVRRLSQEQELEGHQGCVNTLAWNS
NGSLLISGSDDLRINIWNYSSRTLLHSIDTGHTANIFCTKFVPETSDELVVSGAGDAEVR
LFNLSHLSGRAEDDNAITPSALYQCHTRRVKKLAVEPGNPNVVWSASEDGTLRQHDFRES
TSCPPAGTAHQECRSVLLDLRSGAKRALADPPKQTLSLKSCDISATRPHLLLVGGSDAFA
RLYDRRMLPPLTSSRKRMPPPPCVNYFCPMHLSDRGRTNLHLTHVTFSPNGEEVLLSYSG
EHVYLMNVNNGTGILQYTQGDVDNLFSFSNNLHDVEYPPQVSTTPQNGFHRNCNAATVKK
CTELVEIAKRSLEEGTDVFYAIEAANEVLDGHSNDIDSALRHECLCTRAALLLKRKWKND
AHMAVRDCHNARKIDASSFKAHYYMSEALQQLGRCKEALDFANAAQHLNPSDADIVAKVE
SIKRDLQAAGSEKNEETGAGTTRVLSLSDILYRSEANSDSSHDMSRSEREDSDYDEELEL
DIQTSLSDDEGRDPESNAMRGSLNLRIHRVGDDDKPMENTVDNASSGTASSSQNDRTSYQ
PEGAIDMKRRYVGHCNVGTDIKQASFLGQRGEYIASGSDDGRWFIWEKQTGRLMKVLVGD
EAVLNCIQCHPFDSVVATSGIDNTIKIWSPTASVPSVVAGGSAGPATANVVEVMESNQQK
LSRNRENPLSVELMQRFRMQEFAEGNFHPFECTQS
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatctcagttttcacgatggtaacatcttcaatctcctccacacaaggtcccag
gacccaagtcatgaggttgatcaaagaatgcaattacactcttccttggttcggagactc
tctcaggagcaagaattggagggacatcaaggctgtgttaatactctagcttggaactct
aatggttcactgttgatatctggatcagatgatttaaggatcaatatttggaattactcc
agtaggacgcttttgcattctatagatacagggcatactgccaacatattctgtacaaag
tttgttcctgaaacttctgacgagcttgtggtatctggtgctggagatgctgaggtgagg
ctattcaatctatcccacttaagcggtagagcagaagatgacaatgctattactccatca
gcattgtaccaatgtcacacacgaagagtgaaaaaactagctgtcgaacctggtaaccct
aatgttgtatggagtgctagtgaagatgggactttaaggcagcatgatttccgagaatct
acctcttgtcctcctgctggaactgctcaccaagaatgccgcagtgttctgcttgatttg
cgcagtggtgccaaaagagcactagctgatcctcctaagcaaactctctccctgaagtct
tgtgatataagtgccacaagaccacacctacttcttgttgggggaagtgatgcatttgct
cgtttgtatgatagaaggatgctaccaccattgacatcaagtcggaaaaggatgcctcca
cctccatgtgtcaattacttctgtcccatgcatctttctgaccgcgggcgaacaaatttg
cacctaacacatgttactttcagtcctaatggtgaagaagttttgctcagttacagcggg
gagcatgtctacctgatgaatgtaaataatggcactggaatcttgcaatacacacaagga
gatgtagataacttgttttctttcagtaacaacctccacgatgtagaatatccacctcag
gtttccaccactcctcaaaacggctttcacagaaattgcaatgctgcaacggttaagaag
tgtaccgaattggtagaaattgctaaaaggtctttagaagagggtacagatgttttctat
gcaattgaggcagctaatgaagttctggatggtcattctaatgatattgattccgcgcta
aggcatgaatgcctttgtactcgtgccgctttgttgctcaagaggaagtggaagaatgat
gctcatatggcggtaagagattgccataatgctcggaaaattgatgcttcatcttttaaa
gctcattactacatgtctgaagcgctgcagcaattgggaagatgtaaagaagctctagat
tttgcgaatgctgcacaacatttgaacccatcagatgccgatatagtggcaaaggtggag
agcattaaaagggatcttcaagcagctggatctgagaaaaacgaagagacaggagctgga
actactagagtactttctttaagcgacatactatatagatcagaggccaacagtgacagt
tcacatgatatgtcaagatccgaaagagaagattctgattatgacgaggaattggagttg
gatattcaaacttccttgtctgatgacgaaggacgagatccagagtcgaatgctatgcgt
ggcagtctcaacttacgaattcatagagtaggtgatgatgataaaccgatggaaaataca
gttgataatgcctcctcaggaactgcgtcgtcatctcaaaatgatagaacgtcttatcag
ccagagggagccattgatatgaaacgtagatatgttggccactgtaacgtaggaactgat
atcaagcaggccagttttcttggtcagagaggtgaatatattgcaagtggaagcgatgac
ggccggtggtttatatgggagaaacagacgggaaggcttatgaaagtgcttgttggcgat
gaagcagttttgaactgcattcaatgccatccgtttgatagtgttgtagcaacgagtgga
attgataacacaataaagatatggagcccaaccgcatcagtcccatcagttgtagcgggg
ggatcagctggacctgcaaccgccaatgtagtggaagtaatggagagtaatcaacagaag
ctaagccgcaatcgagagaatcctctatctgtggagcttatgcaaaggtttaggatgcaa
gagtttgcagaaggaaactttcacccatttgaatgtactcagagctaa
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integrated database retrieval system
