Arabidopsis lyrata (lyrate rockcress): 9309567
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Entry
9309567 CDS
T01578
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013
Nucleocytoplasmic transport
aly03015
mRNA surveillance pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9309567
09122 Translation
03013 Nucleocytoplasmic transport
9309567
03015 mRNA surveillance pathway
9309567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9309567
03041 Spliceosome [BR:
aly03041
]
9309567
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
9309567
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
9309567
Spliceosome [BR:
aly03041
]
Complex C
Other components
EJC/TREX
9309567
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
9309567
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
9309567
NCBI-ProteinID:
XP_002871462
UniProt:
D7M3N0
LinkDB
All DBs
Position
Unknown
AA seq
427 aa
AA seq
DB search
MGDARDNEAYEEELLDYEEEDEKVPDSGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVL
CHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLAL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagatgctagagacaacgaagcctacgaggaggagctcttggactatgaagaagaa
gacgagaaggttccagattctggaaacaaagttaacggcgaagccgtgaaaaaaggttac
gtgggaatacacagttctggattcagagacttcctgttgaagccagagcttctcagagca
attgttgactcaggatttgaacatccatctgaagtgcaacatgaatgtatccctcaagct
atcttgggcatggatgttatctgccaagcaaagtctggtatggggaagactgctgtgttt
gtcctgtctactcttcaacagattgaaccgtctcctggccaggtttcagcacttgtcttg
tgccatacaagagagctagcttaccagatctgtaatgagtttgtgcgattcagtacctat
ctgcctgatacaaaggtttcagtgttctatggtggagtcaacattaaaattcacaaagac
ttgctgaagaatgaatgtcctcacattgttgttggtacccctggtcgggtgcttgcactg
gccagggacaaagatctctctttgaagaatgtgaggcattttattcttgatgagtgtgat
aaaatgctcgagtcacttgacatgcgaagggatgtgcaggagattttcaagatgactcct
catgacaaacaagtaatgatgttctcagcaactctcagcaaagagatacgcccagtctgc
aagaaatttatgcaagatccaatggaaatatatgttgatgatgaagccaagttgactctt
catggacttgtccagcactacatcaaactgagcgagatggagaaaaaccgcaagttgaat
gaccttcttgatgccttggacttcaatcaagttgtcatatttgtgaagagcgtgagcaga
gctgcggagctgaacaagttactggtggaatgcaatttcccctcaatatgcatccactct
ggcatgtcccaagaagagaggttgactcgatacaaaagtttcaaggaagggcacaagagg
atccttgtcgcgactgacttggtaggaagaggcattgacattgagcgtgtcaacattgtt
atcaactatgacatgccagattctgctgatacatatcttcacagggttgggagagctggt
agatttggaaccaagggtcttgcaatcacatttgttgcatctgcttcagattcagaggtt
cttaatcaggtacaagagaggtttgaggtcgatataaaggagcttcctgagcagattgat
acatccacttacatgccgtcttaa
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