KEGG   Arabidopsis lyrata (lyrate rockcress): 9309742
Entry
9309742           CDS       T01578                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    9309742
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aly03019]
    9309742
   03036 Chromosome and associated proteins [BR:aly03036]
    9309742
Messenger RNA biogenesis [BR:aly03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     9309742
Chromosome and associated proteins [BR:aly03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     9309742
    COMPASS/SET1 complex (yeast)
     9309742
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_CAF1B_HIR1 EIF3I ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_TEP1_C Beta-prop_IFT122_1st WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_NUP159_NUP214 WD40_MABP1-WDR62_1st PQQ_3 WD40_RFWD3 NBCH_WD40 WD_LRWD1 Beta-prop_NWD2_C Methyltransf_13
Other DBs
NCBI-GeneID: 9309742
NCBI-ProteinID: XP_020877561
LinkDB
Position
Unknown
AA seq 333 aa
MSLTELDDGLVRRIAIGAVFSDFGGKIHSVGFHRTDDLLVTSSEDDSLRLFDIANAKQLK
ITYHKKHGTDRVCFTHHPSSLICSSRYNLESTGESLRYLSMYDNRILRYFKGHKDRVVSL
CMSPINDSFMSGSLDRSVRLWDLRVNACQGILHLRGRPAVAYDQQGLVFAIAMEGGAVKL
FDSRCYDKGPFDTFLVGGDTAEVNDIKFSNDGKSMLLTTTNNNIYVLDAYRGEKKCGFSL
EPSQGTPIEATFTPDGKYVLSGSGDGTLHAWNIENPSEVARWENNVGVVSCLKWAPRRAM
FVAASTVLTFWIPNDGEPPAPADPPADQQALSQ
NT seq 1002 nt   +upstreamnt  +downstreamnt
atgtcgttgacggagctagacgacggactggtgcgcaggatagccatcggcgcagtcttc
tctgatttcggagggaagatacattcggtgggtttccataggactgatgatctattggtt
acatccagcgaagatgattcacttcgtctcttcgatatcgccaacgctaaacagctcaag
attacataccataagaaacatggcaccgatcgtgtatgctttacccatcatcccagctct
ctaatttgctcttctcgatacaatttggagtccactggtgaatccttgagatatctctca
atgtatgataatcggatccttcgctactttaaagggcataaagacagggttgtatcgctt
tgtatgtctcccattaatgatagcttcatgtctggttctctcgaccgaagtgtcagactc
tgggatcttcgtgtaaatgcctgccagggaattctacatctacgaggtaggcctgcagtt
gcctatgaccaacaaggcctcgtgtttgcaattgcaatggaaggaggtgctgttaaatta
tttgattcccggtgttatgacaagggtccctttgacacatttctggtgggtggggatact
gctgaggttaacgatatcaaattcagtaacgatggaaaatccatgctcctaaccactaca
aataacaatatctacgttcttgatgcatatcgtggagagaagaaatgtggttttagtttg
gagccatcacagggcacacccatagaagctacctttacaccagatggcaagtatgttctg
tcaggatcaggtgatggaaccttacatgcgtggaacatcgagaacccatctgaggtggcg
aggtgggagaacaacgtaggagtagtgtcgtgtctgaaatgggcacctcgtagagccatg
ttcgttgctgcttctacggttctcacattctggatccccaacgacggtgagccaccagcc
cccgcggatcctcctgccgaccaacaagctctttctcagtga

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