Arabidopsis lyrata (lyrate rockcress): 9309746
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Entry
9309746 CDS
T01578
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 2, mitochondrial
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9309746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9309746
03016 Transfer RNA biogenesis [BR:
aly03016
]
9309746
Enzymes [BR:
aly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
9309746
Messenger RNA biogenesis [BR:
aly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
9309746
Transfer RNA biogenesis [BR:
aly03016
]
Prokaryotic type
tRNA degradation factors
9309746
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_PDCD11
Motif
Other DBs
NCBI-GeneID:
9309746
NCBI-ProteinID:
XP_020877558
LinkDB
All DBs
Position
Unknown
AA seq
992 aa
AA seq
DB search
MSSIVNRARSTSLPNFLAWRALGFRTICSGRLGFAPSNPDSPASAGTKILESFKEEFEVG
SRVVSFETGKIARFANGSVVLGMDQTKVLSTVTCAKTDSPRDFLPLTVDYQEKQYAQGLI
PNTYMRREGAPKERELLCGRLIDRPIRPLFPSGFYHEVQIMASVLSSDGKQDPDILAANA
SSAALMLSDVPWGGPIGVIRIGRICGQFVVNPTMDELSSSDLNLIYACTRDKTMMIDVQS
REISEKDLAAALRLAHPEAIKYLDPQIRLAEKAGKQKKEYKLSMLSEKTLEKVTDLAATR
IESVFTDPSYGKFERGEALDNIGKDVRKVFEEEGDQESLSILPKAVDTVRKKVVRSRMIS
DGFRVDGRHLDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPGEAQSLDSLVGP
PKKRFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPEEAFPYTVRINSEV
MSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITDVDPSSGEIKDYRIVTDILGL
EDHLGDMDFKIAGTRNGVTAIQLDIKPAGIPLDIVCESLENAREARLQILDHMERNINSP
RAQDGAYSPRLATFKYTNDSLRSLIGPMGVLKRKIEEETGARLSIDNGTLTIVAKNQDVM
EKAQEKVDFIIGREIVVGGVYKGTVTSIKEYGAFVEFSGGQQGLLHMSELSHEPVSKVSD
VLHIGQYITTMCIETDVRGNIKLSRKAMLPKPERKPASDAGKDSVMKESSTVYTETSSVG
ETVASMPSIVTPPQKSKLSVPAVVIRTAVECHEAEKSSPVNKNDKPKRATTPKPDRKPKS
TASKLTATQKEEEVLESIAPEETPAECGETLKQDGKLKSASPKNSSTDSNLVSSSKAKKS
TRKENQSENKAEESAFVSTRNLKIGTEMTAKVHEIRARGLVLDLGGELRGMYKFKEDEET
EFEEGDTLQVKCTSFSTKGIPVMALVDEEGEE
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgattgtgaatcgagctaggtcaacatctcttcctaatttcctcgcatggcgt
gctttgggttttcgcaccatctgctccggccgccttggtttcgctccgtctaatccagac
tcgccggcctctgcaggaaccaaaattttggagtcttttaaggaggaattcgaagtcgga
tcccgagtggtctcctttgagacgggaaaaatcgcccgctttgcaaatgggtccgtcgtc
ctcggcatggaccagaccaaagtgctctctactgttacttgtgctaagactgactcgcct
cgggacttcttgcctctcactgttgactatcaagagaagcaatacgctcagggtttgatt
ccaaatacgtatatgcgaagagagggtgcaccaaaggagcgggagctgttatgtggccgg
ctcattgatagaccaatcagaccattgtttccttcagggttttaccatgaagttcagata
atggctagtgttctatcgtcggatgggaagcaggatccagatatactggcagctaatgca
tcatcagctgcgctcatgctatcagatgttccatggggagggcccattggagtcatccgg
ataggaaggatatgtgggcaatttgttgtcaatccgactatggatgagcttagctcaagt
gatctcaatttgatatacgcttgcacaagggataagactatgatgattgatgttcaatcc
cgtgaaatctcagagaaagatttagcagctgctctgaggctggctcatccagaggctatt
aagtaccttgatccccaaataagattggcagaaaaagctgggaaacaaaagaaggagtac
aaattgtccatgctttctgagaaaactttagaaaaagtgactgacttggctgcaacacgt
attgaatccgtctttaccgacccttcatatggaaagtttgaacgtggagaggctctagat
aacattggaaaagatgtaagaaaagtatttgaagaagagggtgatcaagaaagcttgagc
atccttccaaaggctgttgatacagtgagaaagaaggtagtccgttcaaggatgatatca
gatggatttcgagtcgacggaagacatcttgatgaagttaggcccatctactgtgaatcg
cattacttacctgcgctgcatggatcagcacttttctcacgtggagatacgcaggtgctc
tgtactgtcacacttggagccccgggagaggcacaaagcttggattcccttgttggcccc
ccgaaaaagagatttatgcttcactacagctttccaccatattgtacaaatgaagtcgga
aaacgaggaggccttaacaggcgtgaagttggtcatggaacacttgctgagaaagcattg
cttgctgtcttgccccctgaagaggcttttccttatactgttcgtataaattcagaagta
atgtcctcagatggatccacgtcgatggcaagtgtttgtggaggtagtatggcattgatg
gatgccggaattcctttgcgagctcatgttgcgggtgtatccgttggtcttatcaccgat
gtagatccatcaagtggtgaaataaaggactaccgtatagtaaccgatattctcggtttg
gaagatcatcttggagatatggatttcaagattgctggcacacgaaatggtgtgacggcg
attcagctggatataaagccagctggaataccattggacatagtttgtgaatccttagaa
aatgcacgtgaagcccgtcttcagattcttgaccacatggagagaaacataaattccccc
cgagcccaggatggggcttattcacctcggctagcaacgttcaagtacaccaatgactca
cttcgtagcttgatcggacctatgggtgtactcaaaagaaagattgaagaggaaacaggt
gcaagattgtctattgataatggaacattaactattgttgccaagaatcaggatgtgatg
gaaaaggcccaagaaaaggttgacttcatcattggtcgtgaaatagttgttggtggcgtg
tacaaaggcacagtgacatctataaaagagtatggtgcatttgttgagttcagtggtggt
cagcaaggtctactacatatgtctgagctatctcatgaaccagtctccaaggtttcagat
gtattacatattggccagtacatcactacgatgtgcatcgaaaccgatgtccggggtaac
attaaattatcccgcaaagcaatgttgcccaaacccgagcgcaaaccagcatctgatgct
ggaaaagactcggtgatgaaagagtcgtcaactgtctacacagaaacgtctagtgttgga
gagactgttgcaagcatgcccagtatcgtaacgccacctcagaaatctaaattatcagtt
cctgcagttgtcatccgtactgctgtggagtgtcatgaggcagagaaatcttcccctgtg
aacaagaatgacaaacccaaacgcgctacgacaccgaagccagaccggaaacccaaatcc
actgcctctaaactgactgcgacacagaaggaagaggaggtactcgaatccattgctcca
gaagaaactccagctgaatgcggtgagacactgaagcaggacgggaagctaaaatccgct
tcgcccaaaaacagtagcactgattctaacctagtatcatcttcaaaagctaagaaatca
actaggaaggagaatcaatcagagaacaaggctgaagagagtgcattcgttagtacccga
aatctgaaaataggaacagaaatgacggccaaggtccacgagattcgagcccgtggattg
gttcttgatttaggtggtgaactacgtggtatgtacaaattcaaggaagatgaagagaca
gagtttgaagagggagacacattgcaagtgaaatgtacaagttttagtactaaaggaatc
cctgtgatggctttggttgacgaagagggagaagaatag
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