Arabidopsis lyrata (lyrate rockcress): 9309751
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Entry
9309751 CDS
T01578
Name
(RefSeq) LOW QUALITY PROTEIN: polygalacturonase At1g48100
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00040
Pentose and glucuronate interconversions
aly01100
Metabolic pathways
Module
aly_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
9309751
Enzymes [BR:
aly01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
9309751
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Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
EAD10
NosD
Motif
Other DBs
NCBI-GeneID:
9309751
NCBI-ProteinID:
XP_020879025
LinkDB
All DBs
Position
Unknown
AA seq
432 aa
AA seq
DB search
MYRLTLKCLSLNFLLLISSLSSRFGTCDARHSVYWKGNRRSIAQGESSGTINVLDHGAKG
DGKSDDTKAFEDAWKVACKVAASTLLVPSGSTFLVGPISFLGKECKENIVFQIDGKIIAP
TSASAWGSGLLQXIEFKSLKGITIKGKGIIDGRGSVWWNNAKMPRTKPTALRFYGSNGVT
VSGITIQNSPQTHLKFDNCKSIQVSDFTTSSPGDSPNTDGIHLQNSQDAVIYRSTLACGD
DCISIQTGCSNINIHDVDCGPGHGISIGGLGKDNTKACVSNITVRDVTMHETTNGVRIKS
WQGGSGSVKQVMFSNIQVSNVANPIIIDQYYCDGGGCHNETSAVAVSNINYINIKGTYTK
EPVRFACSDSLPCTGISLSTIELKPATGKASSLDPFCWKAHGELKTKTLPPIQCLKTEKS
PEAASRSNNDAC
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtatagactaaccttgaaatgtctttctctgaactttcttctcttaatctcctcactc
tcttcgaggttcgggacttgtgacgctaggcacagtgtatactggaaaggaaaccgcagg
tctattgctcaaggggaaagttcaggaacaatcaatgtgcttgaccatggcgcaaaaggt
gatgggaaaagtgatgacacaaaggcttttgaagatgcttggaaggtagcttgtaaggtg
gcagcgtcaacattattagttccatctggttctacgttccttgttggtcctatttctttc
ctgggaaaagaatgtaaagagaacattgtgtttcagatagatggaaagatcatagctcca
acgagtgcaagtgcatggggatcaggtcttttgcaatgaatagaattcaaatcacttaaa
ggaatcactataaaaggaaaagggataatcgatggacgaggatcagtatggtggaacaac
gcgaaaatgccaaggaccaaaccaacagctttgaggttctacgggagtaacggtgtaacg
gtcagtggaataaccatacagaacagccctcaaacccatctcaagtttgataactgcaaa
agcattcaagtgtctgatttcacaacttcatcccctggagattccccaaacacagatgga
atccacctgcaaaactctcaagatgccgttatttaccgcagcacactggcctgtggagat
gactgtatatcaattcaaactggatgctcgaatatcaacatacacgatgtagactgtggg
cctggccatggaattagcattggaggactgggaaaggacaatacaaaggcgtgtgtttca
aacatcactgtccgtgatgtcacgatgcatgaaactacgaatggtgttcgaataaagtcc
tggcagggaggatcagggtctgtaaaacaagttatgttttcaaatattcaagtcagcaac
gtagccaatccaataataatagatcaatattactgcgatggtggcggatgccataatgaa
acttcagcagtcgctgtatcaaacataaactacataaacataaaaggtacctacaccaaa
gaacctgtacgctttgcctgcagtgatagcttgccatgcacaggaatctcactttcgacc
atagagcttaagccagccacaggaaaagcaagttcactagatcctttctgctggaaggca
cacggtgaactgaagacaaaaactcttccaccaatacaatgtttgaaaacagaaaagtca
ccagaagctgcaagccggtctaataatgatgcttgctga
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