Arabidopsis lyrata (lyrate rockcress): 9309945
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Entry
9309945 CDS
T01578
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9309945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9309945
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
9309945
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
9309945
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
9309945
NCBI-ProteinID:
XP_020879004
LinkDB
All DBs
Position
Unknown
AA seq
870 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNVNQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQSLVDARKLIEKEMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRHKD
HIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEVEG
LEDLVTAGPLVKGTPLSMKSSLAASASQVRVSIPISLCLKIFCLCFFIFALFQSISLPTH
HQSTSQEKTEDPSLPDGSAEMVPKTPPPKNGAGLHSAPSTPAGGRPSLNVPASNISNASV
TLSTSIPTQTSIESMGSLSPVTAKEEDATTLPSRKPPSSVADTPLRGIGRVSIPNQPQPS
QPPSPIPANGSRISATSAAEVAKRNIMGVESNVQPLTSPLSKMVLPPTAKGNDGTASDSN
PGDVAASIGRAFSPSIVSGSQWRPGSPFQSQNETVRGRTEIAPDQREKFLQRLQQVQQGH
GNLLGMPSLSGGNEKQFSSQQQNPLLQQSSAISPHGSLGIGVQAPGFNVMSSASLQQQSN
AMSQQLGQQPSVADLDHVRNDDQPQQNLPDDSASITASKTIQNEDDSKVLFDTPSGMPSY
MLDPVQVSSGPDFSPGQPIQPGQSSSSLGVIGRRSNSELGAIGDHSAVGPMHDQMHNLQM
LEAAFYKRPQPSDSERPRPYSPRNPAITPQTFPQTQAPIINNPLLWERLGSDAYGTDTLF
FAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWFQRHKEPKIATDEYEQGAYVYFDFQTP
KDENQEGGWCQRIKNEFTFEYSYLEDELVV
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagccggaaattacaaggcgagatagatcgggtgctgaagaaggttcaagaa
ggtgttgatgttttcgacagcatctggaacaaggtatatgatacagacaatgttaaccaa
aaggaaaagtttgaggcggacttgaagaaggaaatcaagaagctgcagcggtatagagac
cagatcaagacttggattcagtccagtgagatcaaagataagaaagtcagtgcatcatat
gagcaatccctggttgacgctcggaagcttattgagaaagagatggagaggtttaagatc
tgtgagaaagagaccaagacaaaagctttttccaaggaaggactgggtcagcaacctaaa
actgacccaaaagagaaagcaaagtcagagacaagggattggttaaacaatgtggtgagt
gaactggagtcacagattgatagctttgaagctgaattggaaggactgtctgtcaaaaaa
ggaaagacaagaccgcccagattgactcatcttgagacatctatcacaaggcacaaggat
cacataataaagctggaactgatcttgaggcttctagacaatgatgaattaagtccagaa
caagtaaatgacgtcaaagattttctggatgattatgttgaacgaaatcaggatgatttt
gacgaattcagtgatgtcgatgagctctatagcacgttgccactagatgaggtggagggt
cttgaagatctagttactgctggcccccttgtcaagggtactcctttgagcatgaagagt
tctttggcagcgtcagcatctcaagttcgggtaagtattcctatatctctttgcttgaag
attttttgtttatgtttctttatttttgcgttgtttcagagcataagtttgccaactcat
catcagagtacttcgcaagagaaaacagaggatccatctttaccggatggcagtgctgag
atggttccaaaaacccctcccccaaagaatggcgcaggccttcactcagcaccatcaaca
cctgccgggggacgtccaagtttgaatgtgcctgccagtaatatctcaaatgcatcagtt
accttatcaacttctattcctactcaaacttccatagaaagcatggggagtttgtctccc
gtgactgccaaggaagaagacgcaacaaccttgccttctcgtaaaccaccctcatctgtt
gctgatactccattgaggggcattggtagagttagtatccccaaccagccccaaccaagc
cagcctccgtctccaattccagctaatggatctcgcattagtgcaacttcagcagctgaa
gttgcaaagagaaatataatgggagttgagagcaatgtccaacctctaacttctccactg
agcaaaatggtattgccaccaactgcaaagggtaatgatggaactgcctctgatagtaac
cctggtgatgttgcggctagtatcggtagagctttttcaccatctattgtatctggttcg
cagtggaggcctggtagtccctttcagagtcagaatgaaacggttcgtgggagaactgaa
atagcaccagatcaaagagagaaatttttacagaggttacagcaagtacagcaaggccat
ggtaacctcttaggcatgccttctctatctggaggaaatgagaagcagttttcttcacaa
cagcaaaatcctctattacagcagagctctgccatttctcctcatggaagcttgggaatc
ggagttcaggcaccaggttttaatgtcatgagttctgcctccttacagcagcagtcaaat
gccatgagtcaacaattgggtcagcagccttctgttgcagatttagaccatgtcagaaat
gatgatcaaccgcagcaaaacttacctgatgattcagcttccataacagcttcaaaaact
attcaaaatgaggatgattctaaagttctatttgatactccgtccggaatgcccagctac
atgttggatccagtacaggtatctagcggtcctgatttctctcctggacaacccatacaa
ccaggtcaatcttcaagtagccttggggtcattggccggagaagtaactctgaattagga
gccattggtgaccattcagctgtagggccaatgcatgatcaaatgcacaatctccagatg
cttgaagctgctttctacaaacgtcctcaaccctcagattcagaacgtcctagaccctat
tctccgaggaacccagcaatcacacctcaaacatttccccaaacacaagcaccaatcata
aacaatcctttgctctgggaacgtttaggcagcgacgcttatgggacggatactttgttc
tttgcgttctattatcagcagaactcataccagcaatatctagcggcaaaagagctgaag
aaacagtcatggagataccacagaaagttcaacacttggtttcagagacataaagagcca
aagattgcaaccgatgaatatgaacaaggagcctatgtttactttgatttccaaaccccc
aaagacgagaatcaagaaggaggatggtgtcagaggatcaaaaacgagttcacatttgaa
tacagttatcttgaagatgaactcgtcgtatag
DBGET
integrated database retrieval system
