Arabidopsis lyrata (lyrate rockcress): 9309962
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Entry
9309962 CDS
T01578
Name
(RefSeq) protein kinase 4 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
9309962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9309962
03019 Messenger RNA biogenesis [BR:
aly03019
]
9309962
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
9309962
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
9309962
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
9309962
NCBI-ProteinID:
XP_020879127
LinkDB
All DBs
Position
Unknown
AA seq
460 aa
AA seq
DB search
MRPPFNSFQPQARPYRPQHQQQQQNNGYSNHHQQHNGYQNPMNSNQLGMMNPQMMSNPMM
GHMNNPIPMPNMPIHPQFFNNMPQQQQLHQFAMPNHINQLLPNLLGNLQFAVANSNLMGH
SLPNFFQPNLEPSAFTSRPQLNSFNSLPYPPVPNHHLRPPGFSEPRPQGQSVGIDDRTNG
SGSNGNDFRNKFTKHQNFKGPGQGFQRPQLHQADNGKRKSGFNKDHRGKGNYNKMKNGLD
GSDADNIAKEKKRSYALMYTPKDVNQWREARRKNFPTRLNVEKKVKKNVSASILDEEAKM
RRQQLREVLAKQAELGIEVADVPSHYLSNTDERVHGDNGANYGNFQRKDGQKRKFQNNRH
KQRRHGRKDKFDKTPRLDDKNSSQESPMTTKKPTLLEKLLSANIKRDKIHLLQVFRFMVM
NSFLKEFPEQPLKLPLITVEETGDDLSDVDVDVDVDVGCG
NT seq
1383 nt
NT seq
+upstream
nt +downstream
nt
atgcgacctccgttcaattccttccagcctcaagctcgtccttatcgaccgcaacatcaa
caacaacaacagaacaatgggtattctaatcaccaccaacaacacaatgggtatcagaac
ccaatgaactctaatcaattagggatgatgaatccacagatgatgagtaatccaatgatg
ggtcacatgaacaatcccattccaatgcctaatatgccaatacatcctcagttctttaac
aatatgcctcaacaacaacaacttcatcagtttgctatgcccaaccatatcaaccagtta
cttcccaatctcttgggcaatcttcagtttgcagttgctaatagtaaccttatgggtcac
tctcttcccaattttttccagcctaatcttgaaccttctgctttcacttctcgaccacag
cttaattcctttaactctcttccttatcctccggttccaaatcaccatttgcggcctcca
ggtttctcagagccaagaccacaagggcagtcagtaggaattgacgatagaaccaatggt
tccggttctaacgggaatgattttcgaaataaatttaccaaacatcaaaatttcaaaggc
cctggtcaaggattccagagacctcagttgcatcaagcagataatggaaagagaaagtct
ggattcaataaggatcacaggggcaaagggaactataataagatgaaaaatgggctcgat
ggatctgatgctgataacatagctaaggagaagaaaagatcatatgctttgatgtataca
ccaaaagatgttaaccaatggcgtgaagctcggcgtaagaattttccaacgagactcaat
gttgaaaagaaagtaaagaaaaatgtttcagccagcatccttgacgaggaagcaaaaatg
cgtcgtcagcaactccgggaagttctagcaaagcaggctgagttaggtattgaagttgca
gatgttccttcacattatttatctaatacagatgaacgagttcatggagataatggagcc
aactatggaaattttcaacgcaaggatgggcaaaagagaaaattccagaacaatagacat
aagcagagaagacatggtagaaaagacaagtttgataagacaccaagactcgatgacaaa
aattcatctcaagaatctcccatgacgactaaaaaacctacattgcttgagaagctccta
agcgcaaacataaagagagacaaaatccatttattacaggtcttccgcttcatggtaatg
aattcatttttgaaggagtttccagagcaacctctgaagttacctttgattacggtagaa
gaaactggcgatgaccttagtgatgtggatgtggatgtggatgtggatgtgggatgtgga
tga
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integrated database retrieval system
