KEGG   Arabidopsis lyrata (lyrate rockcress): 9310151
Entry
9310151           CDS       T01578                                 
Name
(RefSeq) putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2 isoform X1
  KO
K15505  DNA repair protein RAD5 [EC:5.6.2.-]
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:aly00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aly03400]
    9310151
DNA repair and recombination proteins [BR:aly03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    9310151
SSDB
Motif
Pfam: SNF2-rel_dom UBA_RAD5A Helicase_C HIRAN zf-C3HC4_3 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_2 Prok-RING_4 DEAD RING_XB3-XBAT31 zf-C3HC4_4 ResIII zf-RING_5 zf-RING_4 zf-ANAPC11 zf-P11
Other DBs
NCBI-GeneID: 9310151
NCBI-ProteinID: XP_020877267
LinkDB
Position
Unknown
AA seq 1029 aa
MGTKVSDDLVSTVRSVVGSDYSDMDIIRALHMSNRDPTAAINIIFDTPSFGKPDVATPIP
SGSNGGKRVENRIKGCSFGDSASVGVTHLVEEEDESVNGGGEESVSGNEWWFVGCSELGG
LSTCKGRKLKSGDELVFTFPHSKGLKPETTPGKRGFGRGRPALRGASDIVRFSTMDSGEI
GRIPNEWARCLLPLVRDKKIKIEGSCKSAPEALSIMDTILLSVSVYINSSMFQKHSATSF
KTASNTAEESMFHPLPNLFRLLGLIPFKKAEFTPEDLSSKKRPLSSKDGSAIPTSLLQLN
KVKNMNQDANGDENEQCISDGDLDNIVGVGDSSGLKEMETPHKLLCELRPYQKQALHWMT
QLEKGKCTDEEATMLHPCWEAYCLADKRELVVYLNSFTGDATIHFPSTLQMARGGILADA
MGLGKTVMTISLLIAHSWKAASTGFLCPNYEGDKVISSSVDGLTSPPVKATKFPGFDKKL
LAQKSVLQNGGNLIVCPMTLLGQWKSEIEMHAKPGSLSVYVHYGQSRPKDAKLLSQNDVV
ITTYGVLTSEFSQENSADHEGIYAVRWFRIVLDEAHTIKNSKSQISLAAAALVADRRWCL
TGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFEEGDERGLKLVQSILKPIMLRR
TKSSTDREGRPILVLPPADARVIYCELSESERDFYDALFKRSKVKFDQFVEQGKVLHNYA
SILELLLRLRQCCDHPFLVMSRGDTTEYSDLNKLSKRFLSGKSSGLEREGKDVPSEAFVQ
EVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSNTGLCPVCRKTVSKQ
ELITAPTESRFQVDVEKNWVESSKITALLEELEGLRSSGSKSILFSQWTAFLDLLQIPLS
RNNFSFVRLDGTLNQQQREKVLKEFSEDGSILVLLMSLKAGGVGINLTAASNAFVMDPWW
NPAVEEQAVMRIHRIGQTKSVKIRRFIVKGTVEERMEAVQARKQRMISGALTDQEVRSAR
IEELKMLFT
NT seq 3090 nt   +upstreamnt  +downstreamnt
atgggaacaaaagtctcagacgatcttgtttccaccgtcagatcagtcgtgggttccgat
tactcagacatggatataatcagggctttacacatgtcgaaccgtgatccaacggctgct
atcaatataatcttcgatactccaagtttcggcaaacctgatgtagccactcctatcccg
agcggctctaatggagggaagagagtcgagaatcgaataaagggctgttcttttggtgac
agcgcaagtgttggagtgactcatctcgtggaggaagaagacgagagtgttaatggtgga
ggagaagagagtgtttcagggaatgagtggtggtttgtgggttgttctgaattggggggg
ttatcgacatgtaaaggaaggaaattgaagtccggtgacgaattggtgttcacatttccg
catagtaaaggattaaagcctgagactacgcctgggaagcgcggctttggacgggggagg
ccagctttgcgtggtgcttctgatatcgtcaggttctctacaatggattcaggagagatt
ggtagaattccaaacgagtgggctcggtgtcttctaccgcttgtgagagacaagaaaatt
aagatagaagggagttgtaagtcggcgcctgaagcattgagcatcatggacacaattctt
ctttctgtaagcgtgtacattaatagttccatgtttcaaaagcatagtgcgacttcattt
aaaacggccagtaatacggcagaggaatcaatgttccatcctctcccaaatctctttcgg
ttactcggtttgatcccctttaagaaggcagagtttactccagaggatttgtcctctaag
aagcgacctttgagttccaaggatggttctgctattcctacttcgttgcttcagctaaac
aaggtcaagaatatgaatcaagatgcaaacggagatgaaaatgagcagtgtatcagtgat
ggtgatcttgataacattgttggtgttggtgacagttctggattaaaggaaatggaaact
ccacataaacttttgtgtgagcttcgtccataccaaaagcaagcacttcattggatgacc
caactggagaaaggaaagtgcactgatgaagaagcaacaatgcttcacccatgttgggaa
gcatactgtttagcagacaagagggaacttgttgtctacctgaattcttttaccggtgat
gctacaatacacttccctagcacacttcaaatggcaagaggaggaattttagcagacgca
atgggtctcggaaagaccgtaatgaccatatcccttttaattgcccattcttggaaagct
gcatcaactgggtttctatgccccaactatgaaggagacaaagtgatcagtagttctgta
gatgggctcactagtcccccagtgaaggcaaccaaatttccaggctttgataagaagctt
cttgcacaaaaaagtgtacttcaaaatggtggtaacctgattgtatgtccgatgacactt
ttaggacagtggaagtcagagattgaaatgcatgcaaagccggggtctctatctgtctat
gttcactatgggcagagcaggccaaaggatgcaaaacttctttcccagaatgatgtggta
atcaccacatatggagttctaacatcagaattttcgcaagagaattcagcagaccatgaa
ggaatttatgcagttcgatggtttaggattgttcttgacgaggcacataccatcaaaaac
tcaaaaagccaaatttccttggctgctgcagctctggttgctgatcggcggtggtgtctt
acgggtactcctattcagaataatctggaggatttatacagccttctacggtttttgagg
attgaaccatggggaacttgggcatggtggaataaacttgtccaaaagccatttgaagag
ggtgatgagagagggctaaagctagtgcagtctatcttaaaacctatcatgcttaggaga
accaagtctagcacagaccgagaaggaaggccgattcttgttctaccccctgctgatgca
cgggtcatttactgtgaactctcggagtctgagagggatttctacgacgcgctatttaaa
agatccaaggtcaaatttgatcaatttgttgaacaaggcaaagttcttcataattatgct
tcgatcctggaactgcttttgcgtcttcgacaatgttgtgatcacccatttttagtaatg
agtcgaggagatacaacggaatactctgatctgaataagctctctaaacgtttccttagt
ggaaagtcttctggcttagaaagggaaggaaaagatgtaccatcagaggcttttgttcag
gaggtggtagaggaactgcgcaaaggagagcagggagagtgtccaatatgccttgaagca
tttgaggatgccgtattaacaccatgtgctcatagattatgtcgtgagtgtctcttggca
agttggagaaattctaatactgggttatgtcctgtgtgtaggaaaactgtaagcaaacaa
gaactcatcacagcaccaaccgaaagtagattccaggttgatgtggaaaagaattgggtg
gaatcatccaaaataactgctcttctagaggagcttgaaggtcttcgttcttcaggctct
aagagcattctctttagccagtggaccgcgttcctcgatctcctccaaattcccctctct
cggaataacttttcatttgtccgtcttgatggcacgctaaatcagcagcagcgagagaag
gttcttaaagaattttccgaagatggcagtatcctggtgctgttgatgtctctaaaagct
ggtggcgtcgggataaatctaacagctgcgtccaatgcttttgtcatggatccatggtgg
aacccagcagtagaggaacaagctgttatgcgtattcatcgtatagggcaaactaagtca
gtcaaaatcagaagattcatcgttaagggaacggttgaggagagaatggaggcggttcag
gcgaggaagcagagaatgatctctggggctttaaccgatcaagaagtacgaagtgcacgt
atagaggaactcaagatgttgtttacctga

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