Arabidopsis lyrata (lyrate rockcress): 9310310
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Entry
9310310 CDS
T01578
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
9310310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9310310
03036 Chromosome and associated proteins [BR:
aly03036
]
9310310
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
9310310
Coactivators
SAGA/TFTC/STAGA complex
9310310
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
9310310
STAGA complex
9310310
TFTC complex
9310310
SAGA complex
9310310
SLIK complex
9310310
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_TEP1_C
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_Vps41
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
eIF2A
RAB3GAP2_N
Cytochrom_D1
WD40_like
PALB2_WD40
Beta-prop_DCAF12
LisH
FdhD-NarQ
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
9310310
NCBI-ProteinID:
XP_002872141
UniProt:
D7M3U9
LinkDB
All DBs
Position
Unknown
AA seq
669 aa
AA seq
DB search
MDPEQINEFVVGYLKKKGFNSAAKDLESYHHHNNNGSSFTSTDYHNDPDLTKLIRSFSQQ
EDDPTRYREGYSNLRSWAYNSLDLYKHELLRVMYPVFIHCYMDLVGKGHTQEARGFFNSF
RRDHEMVHLRDLQKLEGVLAPSHLEEMEFARSLRKSKVNIKISKYSYDLLIQYLQRTKST
LMLGIINEHINFQVYSGQPNSSSDDIEAVTIFGSFQDTANHINQKEIQWGLLEDSLEDRL
EKTGGLLSDSEKGQGESKDGDADDSKKRSTEIGKQGSSLKKLKKDKVGNATAKVARLETI
TVPPAPRVKPELALPVMSTDVEQSILEDLRNRVQLSSVVMPSVSFYTFVNTHNGLNCSSI
SHDGSLVAGGFSDSSIKVWDMAKIGQAGSGVLQGENDTNDQIMGPNGRRSYTLLLGHSGP
VYSATFSPPGDFVLSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPFGHYFASCSH
DRTARIWSMDRIQPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQTGECVRIF
IGHRSMVLSLAMSPDGRYMASGDEDGTIMMWDLLTARCITPLMGHNSCVWSLSYSGEGSL
LASGSADCTVKLWDVTSSTKLTKAVEKNGNTNRLRSLRTFPTKSTPVHALRFSRRNLLFA
AGALSKPAS
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggatccagagcaaatcaacgagttcgttgtgggttacttgaagaagaaaggattcaat
agcgctgctaaagaccttgaatcttatcatcaccacaacaacaatggtagcagtttcact
tctaccgattatcataacgatcctgacctcaccaaactcatccgctccttttcccaacaa
gaagatgatcctactcggtaccgtgagggttacagcaatcttaggtcatgggcttataac
tcactcgatttatataagcatgaattgcttcgagttatgtatcctgtgtttattcattgt
tacatggatttggtgggaaaagggcacactcaagaagcgagaggcttctttaacagcttc
cgcagagatcatgagatggtacacttacgggatcttcagaaattggaaggtgttcttgct
ccatctcatctagaggagatggagtttgctcggtctcttagaaaaagcaaggtcaacatc
aagatttctaagtattcatatgatctgttaattcagtatctacaaaggacaaaatcgact
ttaatgcttggtattattaacgaacacatcaatttccaagtctactcaggacaacctaat
tcctcatccgatgacatagaagctgtcaccattttcggtagttttcaggacacagctaat
cacattaatcaaaaagaaattcagtggggattgcttgaagactcgctagaagatcgcctt
gagaagacaggaggtctgctgtctgattctgagaagggacaaggagaaagtaaagacggg
gatgcagatgatagtaagaaaagatccactgaaattggaaagcaaggctcttccttaaaa
aagttaaagaaggacaaagtgggaaatgcaacagcaaaagttgcacgtctggagactatt
acggtgccaccggcgccacgtgtaaaaccagaacttgccttgccagtaatgtctacagat
gtagagcaatccatccttgaagacctgagaaaccgtgtgcagttgagcagtgtcgtgatg
ccttcagtcagcttttatacatttgtgaatactcataacgggttaaattgttcatctata
tctcatgatggatctctggttgctggtgggttctcagattcatcaataaaggtctgggac
atggctaagataggacaagctggcagtggtgttttgcagggtgaaaatgatacaaatgat
caaattatgggaccaaatggccgaagaagttatacattattactgggtcactcagggcca
gtttactcggccactttcagtccccctggagattttgttctatcttcttcagcagataca
acaattcgactgtggagcacaaaactaaatgccaatctcgtgtgctacaagggtcataat
taccctgtatgggatgtccagtttagccctttcggtcattactttgcaagttgttctcat
gatcgtactgcacggatttggtcaatggatcgaattcaacctcttcggataatggcaggg
catctatctgatgttgattgtgtacagtggcatcccaattgtaactacattgcaaccggt
tctagtgataagacggttagactgtgggatgtgcaaactggggagtgtgtccggatattc
attgggcacaggagtatggttttatcattggctatgtctccggatgggagatatatggcc
tccggtgatgaagatggcaccataatgatgtgggacctcttaacagctcgctgcatcact
cctctcatgggccataattcatgtgtctggagtctctcttacagcggcgagggctctctt
ctggcttctggatctgcagactgcacagtgaaactgtgggacgtcacctcaagtaccaaa
ttaacaaaggccgtggaaaagaatgggaacaccaacaggttgcgctcgctcaggactttc
cccaccaagtccacaccagttcacgctctcagattttctcggagaaatttgttgtttgct
gcaggagcactctctaaacctgcaagctga
DBGET
integrated database retrieval system
