Arabidopsis lyrata (lyrate rockcress): 9310433
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Entry
9310433 CDS
T01578
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly00040
Pentose and glucuronate interconversions
aly01100
Metabolic pathways
Module
aly_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
9310433
Enzymes [BR:
aly01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
9310433
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Paralog
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
PITH
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
9310433
NCBI-ProteinID:
XP_020876248
LinkDB
All DBs
Position
Unknown
AA seq
399 aa
AA seq
DB search
MGIFETILRISILINFIYFGLVNGQNYNVLKFGAKGDGETDDSNAFIQAWNATCGGEDNI
NTLLIPSGKTYLLQPIEFKGPCKSTSIKIQLDGIIVAPSNIKTWSNPKSQMWISFSSVFS
LMIDGSGKIDGRGSSFWEINLNTSERPTALHIYKCDNLTINGITSIDSPKTHISIKGCNY
ATISKINILAPEKSPNTDGIDISYSTNIKISDSTIQTGDDCIAIDNGSSGINITQINCGP
GHGISVGSLGADGTNAEVSDVHVTHCTFNETMNGARIKTWQGGQGYARNISFENITLINT
RNPIIIDQQYIDKGHIDATKDSAVAIGNVKYIGFRGTTVNEYAITLNCSAITHCKDVVMD
DIQVTMENGEKAKAECQNVEGESSDSDLMRDCFKNSSTL
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgggtatttttgaaaccatactacgtatatcaatattgataaattttatctattttggt
cttgtaaacggccaaaactacaatgtactcaaatttggtgctaaaggagatggtgaaacc
gatgattcaaatgcttttatacaagcatggaacgctacatgtggtggagaagataacata
aatacacttcttattccctctggaaaaacatatttgcttcaacctattgagttcaaaggc
ccttgtaaatctacgtccataaaaattcagttggatggtatcattgtcgcacctagcaac
atcaaaacatggtccaaccccaaatctcaaatgtggattagtttttcatctgtatttagt
ctaatgatcgatggttctggaaagattgatggtcgcggttcttccttttgggagataaat
ctaaacacttctgaacgacctacagcactacatatttacaaatgtgataatcttacaata
aacgggataacttcgattgatagtccaaaaactcatatatcaatcaaaggatgtaattat
gctacaatatcgaaaataaatattttggcacctgagaaaagtcccaacacagatgggatt
gatataagttactcgactaatatcaaaatatccgactctacaattcaaactggggatgat
tgcatagcaatcgacaatggaagttctggtattaacatcacacaaattaattgtggacct
ggtcatggaataagtgtaggaagtctaggagctgatggaacaaatgccgaagttagtgat
gttcatgtgactcattgtacttttaatgaaacgatgaatggagctagaattaagacatgg
cagggtggacaaggttatgcaagaaacataagttttgagaatatcacactcattaacaca
agaaatccaattatcattgaccaacaatatattgataaaggacatattgatgccactaag
gattcagcagtggcaattggcaatgtgaaatatattggttttcgtggaaccacagtgaat
gagtatgctataacacttaattgtagtgccatcacacattgtaaagacgttgtcatggat
gatattcaagttacaatggaaaatggagaaaaagctaaagctgaatgtcaaaatgttgaa
ggagaatctagtgatagtgatttgatgcgcgactgctttaaaaatagtagtactctttaa
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