Arabidopsis lyrata (lyrate rockcress): 9310514
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Entry
9310514 CDS
T01578
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9310514
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9310514
03041 Spliceosome [BR:
aly03041
]
9310514
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
9310514
Spliceosome [BR:
aly03041
]
Complex B
Other components
Prp19-related factors
9310514
Complex C
9310514
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
ARM_TT21_C
TPR_5
Motif
Other DBs
NCBI-GeneID:
9310514
NCBI-ProteinID:
XP_020877009
LinkDB
All DBs
Position
Unknown
AA seq
919 aa
AA seq
DB search
MAISKDLYPSQEDLLYEEELLRNPFSLKLWWRYLIAKAESPFKKRFIIYERALKALPGSY
KLWYAYLRERLDIVRNLPVTHPQYDSLNNTFERALVTMHKMPRIWVMYLQTLTVQQLITR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQDGIPIETSLRVYRRYLMYDPSHIEEFIEFL
VKSERWQESAERLASVLNDDKFYSIKGKTKHKLWMELCELLVHHANVISGLNVDAIIRGG
IRKFTDEVGMLWTSLADYYIRKNLLEKARDIYEEGMMKVVTVRDFSVIFDVYSRFEESTV
AKKMEMMSSSDEEDENEENGVEDEDEDVRLNFNLSVKELQRKILNGFWLNDDNDVDLRLA
RLEELMNRRPALANSVLLRQNPHNVEQWHRRVKIFEGNAAKQILTYTEAVRTVDPMKAVG
KPHTLWVAFAKLYENHKDLVNTRVILDKAVQVNYKNVDHLASVWCEWAEMELRHKNFKGA
LELMRRATAVPTVEVRRRVAADGNEPVQMKLHRSLRLWSFYVDLEESLGTLESTRAVYEK
ILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLTKFVKRYG
KTKLERAKRVIEHAVSMAPSDAVRTLYLQYAKLEEDYGMAKRAMKVYEEATKKVPEGQKL
EMYEIYISRAAEIFGVPRTREIYEQAIESGLPHKDVKIMCIKFAELERSLGEIDRARALY
KYASQFADPRSDPEFWNKWHEFEVQHGNEDTYREMLRIKRSVSASYSQTHFILPENMMQK
DKLLDVEDAKDELKKAGLPEDEMAALERQLLTTTTTTTTAAAKDGVRRVGFVSAGVISQS
GENEGKPVTGNGEDSELPDESDDESDGDDQVEIAQKEVPAAVFGGLARKRDENDEEAGED
GAAKKLGALERIKRQKLNQ
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atggcgatttccaaagatctatacccttctcaggaggatcttctctatgaggaagagtta
ttgaggaatcccttcagcttaaagctatggtggaggtatttgatagcgaaagcggaatcg
ccatttaagaagagattcatcatctacgagagagctttaaaagcacttcctggaagctat
aaattgtggtacgcttatcttagagaacgactcgatatcgttaggaatttgccagttact
catcctcagtatgattctctcaataatacttttgaaagagctttggttactatgcataag
atgcctaggatttgggttatgtatcttcagactcttacggttcagcaattgattactcgg
actcgaagaactttcgaccgtgcgctttgtgctttgcctgttactcaacatgataggatt
tgggaaccgtatcttgtgtttgtgagtcaagatgggattcctattgagacttctcttaga
gtttataggaggtatcttatgtatgatcctagtcatattgaggagtttattgagtttctt
gtgaagtcagagcgttggcaggaatctgcagagagattagcttctgtgttgaatgatgat
aagttttattcgattaaagggaagacgaagcataagctgtggatggagttgtgtgagctt
cttgtgcatcatgctaatgtgatttcgggtcttaatgttgatgctatcattagaggaggt
attaggaagtttacggatgaagtgggaatgttgtggacttctcttgcggattattacatt
aggaagaatttgctggagaaagctagggatatctatgaggagggtatgatgaaagttgtt
acggtgagagattttagtgtgatatttgacgtttattcacggtttgaggaaagcactgtc
gctaaaaagatggagatgatgagttcaagtgatgaagaagatgagaatgaagagaatggc
gtagaggatgaagatgaggatgttcgcctcaattttaatctttcggtgaaagagctgcag
aggaagatactgaatgggttttggttgaatgatgataatgatgtggatctgagattggct
cgcttggaagaactgatgaacagaagacctgcactagcaaacagtgtgctccttaggcaa
aatccacacaatgttgagcaatggcatcgtagagtcaaaatatttgaaggaaacgcagcg
aagcagattctcacatacacagaagcagtgaggactgtggatcctatgaaagctgttggg
aagcctcacacgttgtgggttgcttttgccaagttgtatgaaaaccacaaagacctggtc
aacacaagagtgattcttgacaaggcagtccaagtaaactacaaaaacgtagatcatctc
gccagtgtgtggtgtgagtgggctgagatggaattgagacacaagaatttcaaaggagca
ctagagctgatgaggcgtgctacagctgtaccaacagtagaagtcagacgaagagttgct
gctgatggcaatgaaccagtccagatgaagctgcatagatccttgaggctttggtccttt
tatgttgatctggaagaaagtctggggacgttagaatcgacaagagctgtctatgagaaa
atattggatttgagaatagctacaccacagattatattgaattatgctttccttcttgag
gaaaataagtactttgaagatgcattcaaggtgtatgaaagaggtgtcaagatattcaag
tatcctcatgtgaaagacatctgggtaacctatcttacaaagtttgtcaagagatatggg
aagacaaagctggagcgggcaaagagagttattgagcatgctgtttcaatggctccatct
gatgctgtcaggacgttataccttcagtatgctaagctagaagaggattatggtatggcc
aagcgagccatgaaggtttatgaggaagctaccaaaaaagttccagaaggtcagaagctt
gagatgtacgagatatacatttctcgagcagcagagatatttggtgttcccagaacaagg
gagatttatgagcaagcgatagaatctgggcttccacacaaggatgtgaagatcatgtgc
ataaaatttgcagagctggagagaagcttgggagaaattgatcgtgctcgtgcactctat
aagtatgcctctcagtttgcagatccaaggtccgaccctgagttctggaacaagtggcat
gagttcgaggtccagcacggaaatgaggatacctacagagaaatgctccgaatcaagcga
agtgtttccgcaagctacagtcagacccatttcattctaccagagaacatgatgcaaaag
gacaagctgctagatgtagaagatgcaaaagacgagctgaagaaagccggtttacctgaa
gacgaaatggcggctctggagaggcagcttttgactactacaacaactaccaccacagct
gcagcaaaagatggcgtaagaagagttgggtttgtaagtgcaggagttatctcacagtct
ggtgagaatgaggggaaaccagtgacagggaatggagaagacagcgagcttcccgatgaa
agtgatgatgagtctgatggagatgaccaagtggagatcgctcagaaagaagtccctgct
gctgtttttggaggacttgctagaaagagagacgaaaacgatgaagaagctggcgaagac
ggtgcagccaagaaactgggtgcacttgagaggatcaagagacagaagcttaatcagtga
DBGET
integrated database retrieval system
