Arabidopsis lyrata (lyrate rockcress): 9310909 Help Entry 9310909           CDS       T01578                                  Name (RefSeq) DNA damage-binding protein 1a   KO K10610   DNA damage-binding protein 1 Organism aly  Arabidopsis lyrata (lyrate rockcress) Pathway aly03420   Nucleotide excision repair aly04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:aly00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     9310909   09124 Replication and repair    03420 Nucleotide excision repair     9310909  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04121 Ubiquitin system [BR:aly04121]     9310909    03400 DNA repair and recombination proteins [BR:aly03400]     9310909 Ubiquitin system [BR:aly04121]  Ubiquitin ligases (E3)   Multi subunit type E3    Cul4 complex     Adoptor protein      9310909 DNA repair and recombination proteins [BR:aly03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     GGR (global genome repair) factors      Cul4-DDB2 complex       9310909     TCR (transcription coupled repair) factors      Cul4-CSA complex       9310909 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Beta-prop_RSE1_2nd Beta-prop_RSE1_1st CPSF_A Motif Other DBs NCBI-GeneID:  9310909 NCBI-ProteinID:  XP_002872755 UniProt:  D7M2J3 LinkDB All DBs Position Unknown AA seq 1088 aa AA seqDB search MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG RIATLELFRPHGEAQDFLFIATERYKFCVLQWDAESSELITRAMGDVSDRIGRPTDNGQI GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLFGCAKPTIAVL YQDNKDARHVKTYEVSLKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYC SANAFKAIPIRPSITKAYGRVDVDGSRYLLGDHAGLIHLLVITHEKEKVTGLKIELLGET SIASTISYLDNAVVFVGSSYGDSQLVKLNLHPDAKGSYVEVLERYINLGPIVDFCVVDLE RQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGMWSLKSSIDEAFDTFLVVS FISETRILAMNLEDELEETEIEGFLSQVQTLFCHDAVYNQLVQVTSNSVRLVSSTTRELR DEWHAPAGFTVNVATANASQVLLATGGGHLVYLEIGDGKLTEVQHALLEYEVSCLDINPI GDNPNYSQLASVGMWTDISVRIFSLPELTLITKEQLGGEIIPRSVLLCAFEGISYLLCAL GDGHLLNFQLDTTTGQLKDRKKVSLGTQPITLRTFSSKSATHVFAASDRPTVIYSSNKKL LYSNVNLKEVSHMCPFNSAAFPDSLAIAREGELTIGTIDDIQKLHIRTIPLGEHARRICH QEQTRTFGICSLGNQSNAEESEMHFVRLLDDQTFEFMSTYPLDSFEYGCSILSCSFTDDK NVYYCVGTAYVLPEENEPTKGRILVFIVEDGRLQLIAEKETKGAVYSLNAFNGKLLAAIN QKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLLYKHEEGA IEERARDYNANWMSAVEILDDDIYLGAENNFNLVTVKKNSEGATDEERGRLEVVGEYHLG EFVNRFRHGSLVMRLPDSEIGQIPTVIFGTVNGVIGVIASLPQEQYTFLEKLQSSLRKVI KGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKR VEELTRLH NT seq 3267 nt NT seq  +upstreamnt  +downstreamnt atgagctcatggaactacgttgttacggcgcacaaaccgaccagtgtcactcactcgtgc gttggcaacttcacaagtcctcaagagctcaatctcattgttgcgaaatgtactcgaatt gaaatccatttgcttaccccacagggacttcagcctatgctggatgttcctatatatgga agaatcgctactctggagttgttccggccccatggcgaagcgcaagactttttgttcatt gcaactgagagatacaaattctgtgttcttcaatgggatgctgagtcctctgagcttatt acaagagcaatgggggatgtttctgatcgtataggccgaccaacagacaatggtcagatt ggcataattgatccagattgtagattaattggactccatctgtatgacggcttgttcaag gttattccatttgataataagggacagctcaaggaagcttttaatatcaggcttgaggaa ttgcaggttctggatatcaagtttctgtttggatgtgcaaagcccactatcgcagtacta tatcaggacaacaaagatgctcgtcatgtcaaaacatatgaagtctctctaaaagataag gattttgtcgagggtccatggtcacagaacaatctcgacaatggtgctgacttgctgatt cctgtaccaccaccgctctgtggtgtccttattattggtgaagaaacaattgtctattgc agtgctaatgcattcaaagcaataccaataagaccttccatcactaaagcatatggaaga gttgatgttgatggctctaggtatcttcttggtgaccatgctggactgattcatcttctt gttataacgcacgagaaagaaaaggtcactggcctaaaaattgagcttttgggtgaaaca tctattgcatcgactatatcgtaccttgacaatgccgttgtctttgtcggctcaagctat ggcgattcacagctagtaaagctgaatctacaccctgatgcaaaaggctcatatgtagaa gtcttggaaaggtatatcaacttggggcctattgtcgacttttgtgtagttgacctcgag agacaggggcaaggtcaggttgtaacttgttctggagcatttaaggatggttccctccgc gtagttcgcaatggaataggaatcaatgaacaggcgtctgtggaacttcaaggtatcaaa ggaatgtggtcgttgaaatcttcaattgatgaagccttcgatacattcctcgttgttagc tttatcagtgaaactcgtatattagccatgaatcttgaggatgaactggaagaaacagag attgagggcttcttgtctcaagtgcagacgttattttgccatgatgctgtgtacaatcaa cttgtacaggttacctcaaattctgttagactagtcagttctacaactagagaattgcgg gacgagtggcatgccccggctggattcactgttaatgttgcaactgcaaatgccagccag gttcttttggcgactggaggtgggcatttggtgtatctagaaattggagatgggaaattg acggaagtgcaacatgcccttttggagtacgaggtttcttgtcttgatataaaccctatt ggtgacaatcctaattacagtcagctagcttcggttgggatgtggacagatataagcgtg aggatcttttcgctgccagaattgactcttattacaaaagagcaactcggaggggaaata attccccgatctgttcttctttgtgcattcgaagggatatcttacttgctctgtgctctt ggagatggccatcttttgaacttccagttggatacaactactgggcagttgaaagacagg aaaaaagtatcactagggactcagcctataactctgcgtactttttcatcaaaaagcgcc acacatgtctttgctgcatcagatagaccaaccgtgatctatagcagcaacaagaagctg ttatacagcaatgtcaatcttaaagaagttagtcatatgtgccctttcaactctgctgct tttcccgacagtttagcaattgccagggaaggtgaacttacgattggtaccattgatgat attcagaagcttcacatacgcactattcctcttggagagcatgctcgtcgaatttgccat caggagcagacacgtacatttggtatctgcagtttgggaaaccagtcaaatgccgaagaa tctgaaatgcactttgtccgtcttttagacgaccagaccttcgagtttatgtcaacttac cccttggattcctttgaatacggttgctccattctaagctgctcattcaccgacgataaa aatgtctattactgcgttggaacagcatatgttttaccggaggaaaatgaaccaactaag ggaaggatattagtatttatagttgaagatgggaggttgcagttaatcgcggagaaagaa accaaaggagctgtttattctctcaatgcctttaatggaaaacttcttgctgctattaat cagaagattcagttgtacaagtggatgctgcgggatgatggcactcgtgaactgcagtct gaatgcggacatcacggacacattctagctctctatgtacagacccgtggagactttatc gttgttggtgatctcatgaaatcaatctccttattgttatacaagcacgaggaaggtgcg atagaggagagggctcgggattacaatgcaaattggatgtcagcggttgagatactcgat gatgatatttaccttggtgctgagaacaatttcaatctggtaacagtgaaaaagaacagt gaaggtgctactgatgaagaacgaggacggttggaggtagttggagagtatcaccttggg gaatttgtgaacagattccgccatggatctctagtaatgaggctacctgattcagagatt ggtcagatcccaacagtcatctttggtacagtcaatggagtgattggagtgatagcttca cttcctcaagaacaatatactttcttggagaagctgcagtccagtctgaggaaagtgatt aaaggagttggcggattaagccacgagcaatggaggtcgtttaataacgagaaaagaacc gcagaagcgaggaatttcttggatggtgacttaatcgaatcgtttctggatctgagtaga aacaagatggaggatatatcgaaatccatgaatgttcaagtggaggagttgtgtaagaga gttgaagaactcactaggcttcactga

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