Arabidopsis lyrata (lyrate rockcress): 9311005
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Entry
9311005 CDS
T01578
Name
(RefSeq) BRCT domain-containing protein At4g02110 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
9311005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aly03032
]
9311005
03400 DNA repair and recombination proteins [BR:
aly03400
]
9311005
DNA replication proteins [BR:
aly03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
9311005
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
9311005
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
BRCT_2
RTT107_BRCT_5
VHS
Motif
Other DBs
NCBI-GeneID:
9311005
NCBI-ProteinID:
XP_020878397
LinkDB
All DBs
Position
Unknown
AA seq
1349 aa
AA seq
DB search
MYSGVRFALVGFNPVHGNSLRSKLVSGGGVEVGQYSQSLTHLIVDKLVYDDPICVAARNS
GKVVATGSWADQSFDTGVLLNANSLLFRPLRDLNGIPGSKSLVVCLTGYQGQDREDIMTM
VGLIGGQFSKPLVANRVTHLICYKFEGEKYELAKRIKRIKLVNHRWLEDCLKNWKLLPEV
DYEISGYELDIMEASAKDSEDEAEDASVKRANNSPLGLRVGVVAAVEMCKPGGKDIPLVQ
TNLGAQEGSSLCNTSKDNWVTPKKTDRPFEAMVSTDPQQHNYQRESTFQDTSNYVSPVRV
ANKTPEQGISRMETDGSTSINRSIRRHSSLATYSRKTLQRSPETDTLGKESSGQNSSLRM
DDKGLKASTAFNISASKSGSFMERTSLFEDLDKIDMLHGEEFPPMMPQAKFTDGSVSRKD
SQKVHHNSETSIPQPPSLLLQELRPSSPNENLRPVMSISDPTESEEAGHKSPASELNTKL
LSSNVVPVVDALSTAENIISNCARDEIPERSERSLTETMTGNVLLQEPRSGSPKQNLRVV
PTLSDHTESREAAHKLDLSDSAARLFNSGVVPMEADIRTPENSTMKGALDEVPEISVTEP
VMRRSSTSPGSGVIGMKDKQETEPPKKKAAPKKSLGTRGRKKNPINQKGSIYLSEPTPKD
ERNDCLNKGKVSAPVTGNSNQKEISSPVLNTEVVPEMAKHIDSETEAHQGIDSVDNKSLA
PEERDHLVLDLMVNQDKLQAKTPEQADGEVEITVLEREFNDVPTEDPSEGVLQLEVDKNT
SKRKREAAVGKDSLQSGKKGSSSTGKVGKSSVKKTKKSKKEHDTKANGTLTKDIGDKSAD
GKENLAFEHKSGKFSSGGDQSPVAGETLARNEAATKDPSDAAVQLEVDTNKGKRRKQATV
EENCLQTPSVKKAKISIKEDGAKAKNTVMKDIWIHSAEVKENVAVDEKSGDVSSDGAQSL
VAGKSVAKKEAAAKDPSNSAMQLEFDNNKCNHGKEGFVERSSLQSGKKGSSSRVEVGKSS
VKKTKKSKKGSGAKATDTVMKDIGDNSAKEKENIAVDNKSRKVGSGGDQSPVSGKPLARK
KVAKSAKTGTKADKESKQLRVNPLASRKVLQDQEHEPKFFIVSGPRSQRNEYQQIIKRLK
GKCCRDSHQWSYQATHFIAPEIRRTEKFFAAAASGSWILKTDYVADSKEAGKLLQEEPYE
WHSTGLSADGAINLESPRKWRLFREQTGQGALYGLRIVVYGDCTIPALDTLKRAVKAGDG
TILATAPPYTRFLNQNTDFALISPGMPRDDVWIQEFIRHEIPCVLSDYLVEYVCKPGYAL
DKHVLYNTNSWAERSFNKMQRRADVCVYH
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atgtattcgggtgttcgattcgctctcgttggattcaatcccgtccatggaaactcgtta
cggtctaagcttgtgagtggtggtggtgttgaagttggccaatactctcaatccttaact
cacctcatcgtagataagcttgtctatgatgatccgatttgcgttgctgctcgaaacagc
gggaaggtggttgccacagggtcatgggctgatcaaagcttcgacactggagtgcttctt
aatgcaaattcgttattgtttaggcctcttagagatttgaatgggattccagggtccaaa
tccttagttgtgtgcttgaccgggtaccaaggtcaagatagagaagacattatgacaatg
gttggtttgatcggtgggcagttctcaaagccgttggttgctaaccgagtgacccatctt
atatgttacaagtttgagggagaaaagtatgagctagccaagcggattaagaggattaaa
cttgtgaaccaccgctggttagaggactgcttaaagaattggaagctccttcctgaagtt
gattacgagataagtggctatgagttggacataatggaggcttcagctaaggattctgag
gacgaagcagaagatgcctctgtgaagcgtgcaaacaacagccctcttggtcttagggtc
ggtgtcgtcgctgcagttgaaatgtgtaagccgggaggaaaagatattcctcttgttcaa
acaaatttaggcgcacaggaaggttcatcattatgtaatacgtccaaagacaattgggta
actcctaaaaagacggacagaccttttgaagccatggtctctactgatcctcagcagcat
aattaccagagagaaagcacatttcaggatacttccaattatgtgtcccccgttagggtt
gcaaacaagactcctgagcaagggataagcagaatggagactgatggctcgacgtctatt
aacaggagtatcagaaggcattcttctctagccacttattcaaggaaaacacttcagaga
tcaccagagacagatactttgggaaaagagtcaagtggccaaaacagttccctgagaatg
gatgacaagggcctaaaagcttcgactgcctttaatatctctgcatcaaaatctggttct
tttatggaaagaacatcactctttgaagatcttgacaagattgatatgttgcatggggag
gagttccctccgatgatgcctcaggcgaaatttacagatggatctgtcagtaggaaagat
tcacagaaagtacaccacaacagtgagacaagtattccacaaccgcctagtctgttattg
caggaattaagaccaagttcgcctaacgaaaaccttaggcctgtgatgagcattagtgat
ccaactgaaagtgaggaagctggccataaatcacccgcgagtgagttgaacactaaactg
ttgagctcaaatgtggtacccgtggtagatgctctttcaactgcagagaatatcatttca
aattgtgcacgggatgaaataccggagagatcggagagatcattgactgagacaatgaca
ggaaatgtcttattgcaggaaccaagatcaggctcacctaagcaaaaccttagggttgtg
ccaaccctcagtgaccacactgaaagcagggaagctgcacataagttggatctgagtgat
tcagcagctaggttgttcaattcaggtgttgttcccatggaagctgatattaggactcca
gaaaattctactatgaagggtgcattggatgaagtacctgaaatatctgtaactgagcct
gtgatgaggagatctagcacctcgcctgggtcgggtgtaattggaatgaaagacaagcaa
gaaacagagccgcccaagaagaaagcagctccaaaaaagagcctgggcaccagaggcagg
aaaaagaaccccattaaccaaaagggatcgatatacttgagcgaacctaccccaaaggac
gagcgcaatgattgtctaaacaaaggaaaagtttcagcgccagtaacaggtaatagcaat
cagaaggagatatcaagccctgtccttaatactgaggttgtaccagaaatggcaaaacat
attgactcagagactgaagcccatcagggaattgattctgtagataataaatctttagcc
ccagaagagagagaccatcttgtgttggatctgatggtgaaccaagataagctgcaggct
aagaccccagagcaagctgatggagaggtggaaattacggtgctagaacgggagtttaat
gatgttccaactgaagatccaagtgagggtgtattacaattagaggttgataagaataca
agtaaacgcaaaagggaggctgctgtaggtaaagatagccttcaaagtgggaagaaagga
agttcttctacaggcaaagtaggaaagtccagtgtcaaaaagaccaaaaaatctaaaaaa
gaacatgataccaaagcaaacggtactctgacgaaagatataggggataaatctgcggat
gggaaggagaacttagcatttgaacataaatctgggaagttcagttctggtggagaccaa
agccctgttgcgggagaaacattagcaagaaatgaagctgccactaaagatccaagcgat
gctgcagtgcaattagaggttgatacaaataaaggtaaacgcagaaagcaggccactgta
gaagaaaattgccttcaaacacctagtgtcaaaaaggcgaaaatttctataaaagaagat
ggcgccaaagcgaagaatactgttatgaaagatatatggattcactctgcagaagtgaaa
gagaatgtagcagtagatgagaaatctggagatgtcagttctgatggagctcaaagcctg
gttgcggggaaatcggtagctaaaaaagaggctgcagctaaggatccaagtaattctgca
atgcaattagagtttgataataataaatgtaatcacggaaaggagggatttgtagaaaga
agtagccttcaaagtggaaagaaaggaagttcttctagagttgaagtagggaaatccagt
gtcaagaagactaaaaaatctaaaaaaggaagtggcgccaaagcaaccgacactgtgatg
aaagatataggggataactctgcaaaagagaaggagaacattgcagtggataataaatct
agaaaggtgggttctggtggagaccaaagcccggtttcaggaaaaccattagcaagaaag
aaagttgcaaagtcagctaaaacaggtacaaaagcggataaagagtctaagcagctcagg
gttaatcccttggctagtagaaaagtcttacaggaccaagaacatgagccgaagtttttt
attgtcagtggtcctaggtcccagagaaacgaataccagcagatcattaagcgtttaaaa
ggaaaatgttgccgggattctcatcagtggtcttatcaagcaacacatttcattgctcct
gaaatccgtaggactgaaaagtttttcgctgctgctgcatctggaagttggattctgaag
actgactatgtggctgattcaaaggaagctgggaaactattacaagaggagccttatgaa
tggcacagtactggtcttagtgctgatggtgcgataaacctcgagtccccaaggaaatgg
cggctcttcagggagcaaacaggacagggtgctttatatggactgcgcattgttgtatac
ggtgactgcaccatccctgctttggatacactaaagcgagctgtgaaagctggggatggt
acgatactagcaacggcgcctccatacacgcgtttcttgaatcaaaacacggattttgcg
ttgataagccccgggatgccgcgggacgacgtttggatccaagagtttatacgccacgaa
atcccatgtgtcctctccgattacctggtggagtacgtttgtaaacccggatacgcactt
gacaagcacgtgctctacaatacgaactcatgggcagaaaggtcgtttaacaagatgcag
cgtagagcagatgtgtgtgtgtaccattaa
DBGET
integrated database retrieval system
