Arabidopsis lyrata (lyrate rockcress): 9311071
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Entry
9311071 CDS
T01578
Name
(RefSeq) putative cyclic nucleotide-gated ion channel 13 isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
9311071
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
aly04040
]
9311071
Ion channels [BR:
aly04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
9311071
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Motif
Other DBs
NCBI-GeneID:
9311071
NCBI-ProteinID:
XP_002872915
UniProt:
D7M502
LinkDB
All DBs
Position
Unknown
AA seq
697 aa
AA seq
DB search
MAFGRDNRVRFRDWISEGSLTTEYGYGRKVRPSLNTVLKNVRRGFEKGSDKIRTFKKRDS
STTTDKKNIINPQGSFLQNWNKIFLFASVIALAIDPLFFYIPIVDGERNCLNLHHNLEVA
ASVLRTFIDAFYIIHIVFQFRTAYISPSSRVFGRGELVDDPKAIAIKYLSSYFIIDVLSI
LPLPQLVVLAVIPNVNKPVSLITKDYLITVIFAQYIPRILRIYPLYTEVTRTSGIVTETA
WAGAAWNLSLYMLASHVFGALWYLISVEREDRCWREACEKIPEVCTFRFLYCDGNTSVRN
DFLTTSCPFINPDDITNSTVFNFGIFTDALKSGIVESDDFWKKFFYCFWWGLRNLSALGQ
NLNTSKFVGEIIFAVSICISGLVLFALLIGNMQKYLESTTVREEEMRVRKRDAEQWMSHR
MLPDDLRKRIRRYEQYKWQETRGVEEENLLRNLPKDLRRDIKRHFCLDLLKKVPLFEIMD
EQLLDAVCDKLKPVLYTENSYAIREGDPVEEMLFVMRGKLMSATTNGGRTGFFNAVYLKP
SDFCGEDLLTWALDPQSSSHFPISTRTVQALTEVEAFALAADDLKLVASQFRRLHSKQLQ
HTFRFYSVQWRTWGASFIQAAWRRHCRRKLARSLTEEEDRFRNAIAKRERDAASSSSLVA
TLYASRFASNALRNLRTNNLPVLPPKPSEPDFSLRNP
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggcttttggccgcgacaatcgtgtaaggttcagagattggatttcagaaggatcatta
accacagagtatggttacggaagaaaagttagaccatctctaaacacagttttgaagaat
gttcgtagagggtttgagaaaggttctgataaaatcaggacttttaagaaaagagattct
agcaccaccacagataagaagaatattataaacccacaaggctcttttttgcagaactgg
aacaaaatctttctttttgcttctgtgattgctttggccattgatccattgtttttctat
attcctattgttgatggagaaagaaactgccttaatttgcatcataacttggaggtagca
gctagtgtgcttcgtacgtttatagatgccttctacatcattcacattgtgtttcagttt
agaactgcttatatctctccttcttctcgggttttcggaagaggcgagttggttgatgat
cctaaagctatagccattaagtacctctcctcctacttcatcatcgatgttctttctatc
cttccactcccacagcttgtagtcttagctgttatccccaatgtcaacaagccggtctct
ttgatcactaaggactacttgattactgtcatatttgctcaatacattccaaggattctt
cgtatttatccactttacactgaagttacaagaacatctggcatagttactgaaaccgct
tgggctggagctgcttggaacctatctctctatatgttagccagtcatgtgtttggagcc
ttatggtacttaatatcagtagaacgagaagacagatgctggcgtgaagcttgcgagaag
ataccagaagtatgtacctttagatttctctactgcgatggaaacactagtgttagaaac
gatttcctgacaacctcgtgcccgtttatcaaccctgatgatataacgaattcaacggtc
ttcaactttggcatctttactgatgctttaaagagtgggattgttgaatcagatgatttc
tggaagaagttcttctactgcttctggtggggtctgcgtaatttaagtgcattgggacaa
aatctcaatacgagcaaattcgttggggaaatcatatttgctgtatcaatttgcatatct
ggactagtcttattcgcactacttatcggcaatatgcagaaatacttggaatcgacaaca
gttagggaagaggagatgagagtgagaaaaagagatgcagagcaatggatgtctcatcga
atgttacccgatgacttgaggaaacgtatcagaaggtatgagcaatacaaatggcaagaa
actagaggagtcgaagaagaaaaccttctgcgtaatctccctaaagacctcaggagagac
atcaaacgccacttttgcctcgatcttctcaagaaagtacctctgttcgagataatggat
gagcaattgctagatgccgtgtgtgacaagctaaaacccgtgctctacactgagaacagc
tatgcaattcgagaaggagacccagtggaggagatgttgtttgttatgagaggaaaactg
atgagtgccaccacaaacggtggccggaccggcttctttaacgccgtatacctaaaacct
agtgacttttgcggcgaagatcttctcacatgggcattggatcctcaatcttcgtctcat
tttccgatttcgacgagaacagttcaagctttaactgaagtagaagcctttgctttagca
gcagatgatcttaagctcgtcgcttcacaattcagacgactccatagcaaacagcttcaa
catactttcaggttttattcggtacaatggagaacttggggtgcgtcttttatacaagcg
gcgtggcggagacattgccggaggaaactagctaggtcattaaccgaagaagaagatcga
ttccgaaacgcaatcgcaaaacgcgaacgcgatgcggcgtcttcgtccagcctggttgca
acgttatacgcgtcgcggtttgcttcaaacgcgcttcgcaatctgcgtaccaacaacctt
cctgtgctccctcctaaaccctccgagccggatttcagtcttcgaaacccttaa
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