KEGG   Arabidopsis lyrata (lyrate rockcress): 9311104
Entry
9311104           CDS       T01578                                 
Name
(RefSeq) probable E3 ubiquitin-protein ligase XERICO
  KO
K16281  RING-H2 zinc finger protein RHA1
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:aly00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:aly04121]
    9311104
Ubiquitin system [BR:aly04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    9311104
SSDB
Motif
Pfam: zf-RING_2 zf-rbx1 zf-RING_11 zf-C3HC4_2 zf-C3HC4 zf-RING_5 zf-RING_UBOX zf-RING_16 zf-ANAPC11 zf-HC5HC2H_2 Prok-RING_1 zf-C3HC4_3 PHDvar_NSD EHMT1-2_CRR zf-HC5HC2H PHD PHD_NSD RINGv zf-Nse C1_1 zf-RING-like Prok-RING_4 Rtf2 RH_dom zf-UDP
Other DBs
NCBI-GeneID: 9311104
NCBI-ProteinID: XP_020878834
LinkDB
Position
Unknown
AA seq 130 aa
MGFSYAGAGVIIVGVILNDFIRGVRSFLDIRRLLGVYSSASSGSTIAGINKIPMDDMLPA
TKFEEMSRVNPPESCRICQDEFDGGDEVRCLRNCVHVYHKTCIDRWIQDDMMTCPLCRTP
IVPDFYFFRL
NT seq 393 nt   +upstreamnt  +downstreamnt
atgggcttttcttacgccggcgccggagttatcatcgtcggagttatcttgaatgatttt
atcagaggggttcgttcttttcttgatattcgtcgtttgttaggtgtttattcgtcggca
tcttcggggagtaccatcgccggtataaacaagattccgatggacgatatgcttccggcg
acaaaattcgaggagatgtcaagggttaatccgccggagagctgccggatatgccaagat
gagttcgacggcggtgacgaagtccgttgtttgaggaattgcgtacatgtttatcacaag
acttgtattgaccgttggatccaagacgatatgatgacgtgtcctttgtgtaggaccccg
atcgtccctgatttctacttttttcgtttgtaa

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