Arabidopsis lyrata (lyrate rockcress): 9311130
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Entry
9311130 CDS
T01578
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9311130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9311130
03012 Translation factors [BR:
aly03012
]
9311130
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
9311130
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
9311130
Translation factors [BR:
aly03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
9311130
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
NPHP3_N
nSTAND3
ATPase
AAA_19
Dicer_dimer
ABC_tran
AAA_11
ATPase_2
NACHT
T2SSE
PhoH
Motif
Other DBs
NCBI-GeneID:
9311130
NCBI-ProteinID:
XP_002876732
UniProt:
D7LR02
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MKDRVPPSLYVPPHQRLRSDYGFHPLPLSPVRYVSAYDGSVPEDRQPQHPLGTFHCANLD
EWNRKFSMLLHDSLKQEVISRDKKDRRDFDKLAALATTLGLYSHAYAKVVVFSKIPLPNY
RFDLDDKKPQREVNLHTDLLQRVQAYLTDYLSKKPKRIDRVPASSLSRTSSISSTDEWLS
EPPEPMAATNTTLDKILWQRSLQLRDRQQYWQASVEGRRMVESRTSLPAFKQRDSVLTAI
SQNQVIVISGETGCGKTTQIPQFILESEIEANRGAFCSIICTQPRRISAMSVSERVAYER
GEQLGESVGYKVRLEGVRGRDTRLLFCTTGILLRRLLVDRNLRGVTHVIVDEIHERGMNE
DFLLIILKDLLSRRPELKLIMMSATLDAELFSSYFGGAGVIHIPGFTYPVRSHFLEDILE
MTRYRLTPYNQIDDYGQERMWKMNKQIPKKRKSQIAFVVEDALRAADFKEFSPETRESLS
CWNPDCIGFNLIEFLLCHICENEGPGGILVFMTGWDDISSLKEKLQIHPIFGNPDRVMLL
ACHGSMASFEQRLIFEEPASGVRKIVLATNIAETSITINDVAFVIDCGKAKETSYDALNN
TPCLLPSWISKVSAQQRRGRAGRVRPGQCYHLYAKCVYDAFAEYQLPEILRTPLHSLCLQ
IKSLNLGSISEFLSRALQSPELLAVQKAIKYLKIIGALDENEYLTTLGRYLSKLPMEPKL
GKMLILGAILGCLDPILTVAAGLSVRDPFLTPQDKKDLAEAAKSQFSRDHSDHLALVRAY
EGWKKAEEESAVYDYCWRNFLSIQSLRAIDSLRKEFFSLLKDTGLIDGNPSICNSEGNDA
NLTRAVICYGMYPGICSVVHNERSFSLKTMEDGQVLLYSNSVNARETKIPYPWLVFNEKI
KVNSVFLRDSTACSDSTLILFGGSISKGDIDGHLKMLGGYLEFFMKLDVAEIYQTLKKEL
DELIQNKLINPKVDMQAHRELLSAIRLLVSEDRCDGRFVFGHQILRPLEISALSTKPSLL
SRTESGPGGDNSKSQLQTILTRAGYAAPMYKTKQLKNNKFQTTVEFNETQIMGQPCSNKK
GAEKDAAAEAIQWLRGGAKESHEQVNHMSKLLKKSKKDHL
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatcgtgttcctccttccctgtacgttccgcctcaccagcgccttcgttccgat
tacggcttccatcctcttcctctctccccggttcgctatgtctccgcttatgatggcagc
gttcccgaggatcgccaaccgcagcatcctttgggtacctttcattgtgccaacttggat
gaatggaatcggaaattttcaatgcttttgcacgattctcttaagcaagaagtgatttcc
agggataaaaaagatagacgggattttgataaacttgctgctctggctacaaccctggga
ttgtatagtcatgcatatgctaaggttgttgtcttcagtaagatcccactccccaactat
aggtttgatttagatgacaagaagccacagagggaggtgaatttgcatactgaccttctt
caaagagttcaagcttacctcactgactacctcagtaaaaaaccaaagaggatagataga
gtccctgccagttccttgtcaagaactagtagcataagcagtaccgatgaatggctttct
gagccaccagagcccatggctgccaccaacactacgctggacaaaattctttggcaaagg
agtttgcagctgcgtgatcgacaacaatattggcaggcatccgtagaaggccgaagaatg
gtggaatctcggacaagtctccctgctttcaagcaaagggattcagtattgacagcaatt
tcacaaaatcaggttattgttatctctggagaaacaggttgtggcaagaccacacaaatt
ccacagtttattttagaatccgagattgaagcaaaccgtggagctttttgcagtatcata
tgtactcaaccaaggagaatatctgctatgtctgtttcggagagggttgcttacgagaga
ggagagcagttgggtgaatccgttggatataaggttcgattggaaggtgttagaggaaga
gatacccgcctcctcttctgtaccacaggcatattgttgagacggttgttggtagataga
aatttaagaggagttactcatgttattgtggatgaaattcatgagcgtggaatgaatgaa
gatttcctccttatcattcttaaggatctgctatctcgtcgcccagagcttaagctgatt
atgatgagtgcaactttagatgctgagctattctcgtcatactttggtggggcaggtgtc
attcacattccaggatttacatatccggttcgtagtcatttcctagaggatattctggag
atgaccaggtacagattgactccatacaatcaaattgatgattatggtcaagaaagaatg
tggaagatgaacaaacagatcccaaaaaaacggaagagccaaattgcctttgtcgttgag
gacgcactgagagcggctgacttcaaggagtttagccctgagactcgagagtctttatct
tgttggaatcctgattgcattggttttaacctcatagaatttctcctttgccatatatgt
gagaatgagggtcctggtggtattttagtttttatgactgggtgggatgatatcagctct
ctgaaagaaaaactgcagattcatccaatctttggcaacccagatcgggttatgttgctt
gcctgccatggttctatggcaagttttgagcagaggttaatatttgaagaacctgcaagt
ggagtaagaaagatagttctagccactaatatcgcagaaacgagcatcacgatcaatgat
gttgcttttgtcattgactgtggaaaggcaaaagagacctcctatgatgcattaaacaat
accccctgtttgcttccatcttggatttccaaggtttcagctcagcagagaagaggacga
gccggtcgtgttcgacctggtcagtgttatcatctttacgccaagtgtgtatatgatgct
tttgcagaatatcagttgcctgaaattttgaggacgcctttacactcactgtgtctgcaa
atcaaaagcttaaatctcggaagcatatctgagttcttgtcaagggcgctgcaatctcct
gaactactagcggttcaaaaggccattaaatatctgaagataataggcgcattggatgag
aatgaatatctcacaactctaggtcgttatttgtccaagcttcccatggagccaaagctt
ggaaaaatgctcatactaggagctattcttggttgccttgatcccatattgactgttgcg
gctggcctgagtgtgagagatcctttcttgacacctcaggacaagaaagatctcgcagaa
gccgcaaaatcccagttttcacgtgatcacagtgatcatcttgcacttgttcgggcatat
gaggggtggaaaaaagctgaggaagagtctgctgtatatgattactgctggagaaacttt
ttgtcaatacagtcgctgagagctattgattctcttcgaaaagagttcttctcattactc
aaggatactggactaatagatggaaacccatcaatctgcaattcagaggggaatgatgca
aatcttactcgagcagtaatttgctatggcatgtatccaggaatctgctcagttgtgcat
aatgagagatcattttccctaaagacgatggaggatggccaagttcttctttattcaaat
tctgtaaatgcaagagaaacaaaaataccatatccgtggttggtgttcaatgagaagata
aaagtgaactccgttttcttgagggattcaacagcctgctctgactctactcttatcctc
tttggcggtagcatctccaaaggagacattgatggccacctgaaaatgttgggaggatac
ttggagtttttcatgaaacttgatgttgcagagatataccaaaccttgaagaaagagctt
gacgagctaatacagaacaaactaattaatcctaaagtggatatgcaagcacaccgtgaa
ctcttatcagctatacggttgttggtctccgaggatcgatgtgatggaagatttgtgttt
ggtcaccaaatacttaggcctttggaaatatcggcgttgtcaacaaaaccgtcattgctt
tcaaggaccgaaagtgggccagggggtgacaattccaagagtcagctccaaacaatactt
acaagggctggttatgcagcaccgatgtataagactaagcaattgaagaacaacaagttc
caaacaacggtagagtttaatgagacacagatcatgggacagccttgcagcaacaagaag
ggtgctgagaaggatgcggcagctgaagctatacaatggctgaggggcggggctaaggaa
agtcatgagcaggtgaatcatatgtcaaagctgctgaagaaaagcaagaaagatcacctc
tga
DBGET
integrated database retrieval system
