KEGG   Arabidopsis lyrata (lyrate rockcress): 9311302
Entry
9311302           CDS       T01578                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018  RNA degradation
aly03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    9311302
  09123 Folding, sorting and degradation
   03018 RNA degradation
    9311302
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aly03019]
    9311302
   03041 Spliceosome [BR:aly03041]
    9311302
Messenger RNA biogenesis [BR:aly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     9311302
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     9311302
Spliceosome [BR:aly03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    9311302
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 9311302
NCBI-ProteinID: XP_020882140
LinkDB
Position
Unknown
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFVQAEAV
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtctggaagaaaagaaacggttttagatttggccaagtttgtggataagggtgtgcaa
gttaagctcactggtggtagacaagtgactggaactctaaaaggctatgaccaattgctt
aatcttgttcttgatgaagcagtcgagttcgttcgagatcacgatgatcctttgaagact
acggatcagacaagacgccttggtttgattgtttgccgtggaacagcagtgatgcttgtc
tcaccaaccgatggcactgaagaaatcgctaacccgttcgttcaagcagaagctgtctaa

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