Arabidopsis lyrata (lyrate rockcress): 9311302
Help
Entry
9311302 CDS
T01578
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9311302
09123 Folding, sorting and degradation
03018 RNA degradation
9311302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9311302
03041 Spliceosome [BR:
aly03041
]
9311302
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
9311302
mRNA degradation factors
5'-3' decay
Lsm complex
9311302
Spliceosome [BR:
aly03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
9311302
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
9311302
NCBI-ProteinID:
XP_020882140
LinkDB
All DBs
Position
Unknown
AA seq
99 aa
AA seq
DB search
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFVQAEAV
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaagaaaagaaacggttttagatttggccaagtttgtggataagggtgtgcaa
gttaagctcactggtggtagacaagtgactggaactctaaaaggctatgaccaattgctt
aatcttgttcttgatgaagcagtcgagttcgttcgagatcacgatgatcctttgaagact
acggatcagacaagacgccttggtttgattgtttgccgtggaacagcagtgatgcttgtc
tcaccaaccgatggcactgaagaaatcgctaacccgttcgttcaagcagaagctgtctaa
DBGET
integrated database retrieval system