KEGG   Arabidopsis lyrata (lyrate rockcress): 9311957
Entry
9311957           CDS       T01578                                 
Name
(RefSeq) histone deacetylase 7
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03082  ATP-dependent chromatin remodeling
aly03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    9311957
   03083 Polycomb repressive complex
    9311957
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:aly03036]
    9311957
Enzymes [BR:aly01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     9311957
Chromosome and associated proteins [BR:aly03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     9311957
   HDAC complexes
    Sin3A-HDAC complex
     9311957
    BRAF-HDAC complex
     9311957
    REST complex
     9311957
    SHIP complex
     9311957
    MiDAC complex
     9311957
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     9311957
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    9311957
  Chromatin remodeling factors
   NuRD complex
    9311957
SSDB
Motif
Pfam: Hist_deacetyl Acyl-ACP_TE_C
Other DBs
NCBI-GeneID: 9311957
NCBI-ProteinID: XP_002877604
UniProt: D7LRK7
LinkDB
Position
Unknown
AA seq 403 aa
MENTASLVTGPDGRKRRVSYFFEPEIGQPTDPFPSHMAHKLVLTYGLDRHMEISRPYLAG
VFDFTQFHSPEYIQFLASLTPMNLKDPSVSLNKSRFFDLDVNRHTNSTIFNGLFDYCRAS
AGGSLSAAVKLNRREADIAINWAGGMHRAKRDRASGFSFVNDVVLAIAELLKVFKRVLYI
DIGFRHGDAVEEAFYNTDRVMTVSFHTYTDTPFPRDGDRRELYSLKAPLKNGLKDKSLRN
LFRPVINKAMQVYQPEVVVLQCGADSLAGDFTFNLKVKGHGACLEYIRSFNVPLMVLGGG
GSTFRHVARCWCYETAIAVGVGEQLEEELKVNEFHYKPNFQPDFNTARDIEIIRNGLLRQ
LSQLIHVPSVQFQDTPPISEATEPAEVDMEKRQVIQNLRRSKL
NT seq 1212 nt   +upstreamnt  +downstreamnt
atggaaaatacggcgagcttagtgacgggtcccgacggacgaaaacggcgagtgagctac
ttcttcgagccagagattggccaaccaacggatccctttccgagccatatggcgcacaag
ctcgtcctcacatatggcctcgaccgccacatggaaatcagccgcccatatctcgccggc
gttttcgatttcacacaattccactcaccggagtatatccaattcctcgcctcccttacg
ccgatgaatttaaaggatccttccgtctcgcttaacaaaagtcgcttcttcgacctagat
gtgaaccggcacacaaacagtactatcttcaacggcctcttcgattattgccgcgcctct
gctggtggttctttaagcgccgccgtcaaattgaaccgtcgggaagccgatattgctatc
aattgggccggtgggatgcaccgtgccaagcgtgatcgtgcttctggctttagcttcgtc
aatgacgttgtgcttgcgattgccgagttgctcaaggttttcaagcgagttctctacata
gatattggcttccgtcatggggatgcagtggaagaagcattttacaatacggatagagtt
atgactgtttctttccacacatatacggacacacctttcccaagagacggagacagaagg
gagttgtattctctaaaagcaccattaaagaatgggctcaaagataaaagtcttcgcaac
ttgttcagacctgttatcaacaaggcaatgcaagtttatcagccagaagttgttgttctt
cagtgtggtgctgattcattagctggtgattttacattcaacttgaaagtcaagggtcac
ggtgcttgtctcgagtacataagatcttttaatgttcctctcatggtcttgggtggtggt
ggttctacttttcgacatgttgctcgttgctggtgctatgagacagcgattgcggttggg
gttggggaacaacttgaagaagaactcaaagtcaatgagtttcattataagccaaacttc
cagccggattttaacacagcaagagatattgagattataaggaatggtttactacggcaa
ctttcacagctaatacacgtaccaagtgtacagtttcaagacactccaccaatcagtgaa
gctacagaaccggcggaagtggacatggagaagagacaagttatacaaaatttgaggcga
tccaagctatga

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