Arabidopsis lyrata (lyrate rockcress): 9312263
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Entry
9312263 CDS
T01578
Name
(RefSeq) cell division control protein 48 homolog D
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
9312263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9312263
03009 Ribosome biogenesis [BR:
aly03009
]
9312263
04131 Membrane trafficking [BR:
aly04131
]
9312263
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aly04147
]
9312263
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
9312263
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
9312263
Membrane trafficking [BR:
aly04131
]
SNARE
SNARE associated proteins
Others
9312263
Autophagy
Aggrephagy
Other aggrephagy associated proteins
9312263
Exosome [BR:
aly04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
9312263
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_2
AAA_5
AAA_33
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
AAA_28
ATPase_2
AAA_18
Parvo_NS1
nSTAND_NTPase5
ABC_tran
Vps4_C
NB-ARC
AAA_7
NACHT
Viral_helicase1
AAA_lid_PRS2_C
DUF815
TsaE
IstB_IS21
Zeta_toxin
Zot
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
9312263
NCBI-ProteinID:
XP_020880755
LinkDB
All DBs
Position
Unknown
AA seq
810 aa
AA seq
DB search
MANQAESSDSKGTKRDFSTAILERKKAANRLVVDEAINDDNSVVSLHPETMEKLQLFRGD
TVLIKGKKRKDTVCIALADDTCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVH
ILPIDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPAEYCV
VAPDTEIFCEGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPA
LRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSKDTHGYVGADLAALCT
EAALQCIREKMDVIDLDDEEIDAEILNSMAVTNDHFQTALGNSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSVGDAGGA
ADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQI
FKSCLRKSPVAKDVDLRALAKYTQGFSGADITEICQRSCKYAIRENIEKDIEKERKRAES
PEAMEEDEEEIAEIKAGHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPDA
PTGTGAAATVGGVDPFATSGGAADDDDLYS
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatcaagctgaatcatccgactcgaaggggacgaagagggattttagcaccgca
attctggagagaaagaaggcggcgaatcgtttggttgtggatgaggcgattaacgatgat
aactctgtcgtttctcttcaccctgaaaccatggagaagctacagctttttcgtggtgat
accgttttgattaagggaaagaagaggaaggatactgtgtgtattgctttagctgatgat
acttgtgatgaaccaaaaattaggatgaacaaggttgttaggtctaacctcagggttagg
cttggagatgttatctctgttcatcaatgccctgatgtcaagtatgggaagcgtgttcac
atattgcctatcgatgataccattgaaggagttagtggcaatatatttgatgcgtacctt
aaaccttatttcttggaggcataccgtccggtgaggaagggtgatcttttcttggttaga
ggagggatgagaagtattgagtttaaggttattgagaccgatcctgctgagtactgtgtt
gttgctccagatacagaaattttctgtgagggtgaaccgataaagagagaggatgaggag
aggttggatgaagttgggtatgatgatgttggtggtgtcaggaagcaaatggctcagatt
cgggaacttgttgagctcccattgaggcatccacaactcttcaagtccattggtgtgaaa
cctcccaaaggaatcttgctatatggtccccctggttctggaaagacactgattgcccgt
gctgttgctaatgagaccggtgcatttttcttctgtatcaatggtcccgagatcatgtcg
aagctagctggtgagagtgaaagcaacctcaggaaagcgtttgaggaagctgagaagaat
gccccctcaatcatctttattgatgagctcgattcgattgctccaaaaagagaaaagaca
cacggggaagttgaaagacgtattgtatcccagctcttgacacttatggatgggcttaaa
tccagagcccatgtcattgttatgggagcgaccaaccgtcccaacagcattgaccccgct
ttgagaaggtttggacgatttgacagagagattgatattggtgttcctgatgagattggt
cgtcttgaagttctcaggattcacaccaagaacatgaagcttgcggaagatgttgatttg
gaaagagtatccaaagacacccatggttatgttggtgctgatcttgcagcattatgcact
gaagctgctctccaatgcattagggagaagatggacgtaattgacctagatgacgaggag
atagatgctgaaattctcaattctatggctgtgactaatgatcatttccagactgccctt
ggtaacagcaatccttcagctctacgtgagacggtcgttgaggtgcctaatgtttcttgg
gaggacattggtggtcttgagaatgtcaagagggagctccaagagactgttcaatatcca
gtggagcatcctgagaaattcgagaagtttgggatgtcaccgtctaaaggagtcctattc
tatggtccccctggttgtggaaagactctcttggctaaggctattgcgaacgagtgtcaa
gccaacttcattagtatcaaaggtcctgagctcctcacaatgtggtttggtgagagtgaa
gccaatgtgagagagatattcgacaaggcacgccagtctgctccttgtgttcttttcttt
gatgagcttgactccattgccactcagagagggaacagtgtcggagatgctggtggtgca
gcagatagagtattgaaccagcttcttacggagatggatggaatgaatgctaagaagacg
gtcttcatcatcggagctacaaacagaccagacatcatcgaccctgcacttctgcgtcct
ggtcgtctcgatcagctcatctacattcctcttcctgatgaggagtctcgttaccagatc
ttcaagtcttgcctgaggaaatcgcctgtagctaaagatgttgacctgagggctcttgcg
aagtacacccaaggcttcagcggtgcagacatcacagagatttgccagcgttcttgcaag
tatgcgatcagagaaaacatcgagaaggatattgagaaggagaggaagagagcagagtcg
ccagaagcaatggaagaggacgaggaggagattgcagagattaaagctggtcactttgag
gaatccatgaaatatgcaaggagatcagtaagtgatgcagacattcgcaagtatcaggct
tttgctcagactctacagcaatcacgtgggtttggaagcgagttcaggttcccagatgcg
ccgacagggactggagctgctgccacagtcgggggagtcgacccgtttgccacatccgga
ggagcagccgacgatgatgatctctacagctga
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integrated database retrieval system
