Arabidopsis lyrata (lyrate rockcress): 9312497
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Entry
9312497 CDS
T01578
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
9312497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9312497
Enzymes [BR:
aly01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
9312497
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
9312497
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
PGA2
Motif
Other DBs
NCBI-GeneID:
9312497
NCBI-ProteinID:
XP_020880322
LinkDB
All DBs
Position
Unknown
AA seq
1665 aa
AA seq
DB search
MAHVQTTEGASQVVESVRFSFMTEQDVRKHSFLKVTSPILLDNVGEPYPGGLYDPKLGPI
EDKKACDTCGQLNLACPGHCGHIELVYPIYHPLLFNLLYNFLQRTCFICHHFMAKPYDVE
RAVSQLKLIIKGDIVSAKQLESNTPTKSDSSDVSCESGVTTDSSEGCEDSDMEDQRWTSL
QFAEVTAVMKNFMRLSSKSCNRCKAVNPQLEKPMFGWVRMKAMKGSDIVANVIRGLKLKK
STSSVENPDDFDDSGIDALSEVEDGDKETREKSTEVVKEFEEHNNSSKRDLLPTEVREIL
KDLWENEHDFCSFIGDLWQSGSEKIDYSMFFLESVLVPPIKFRPSTKGGDSVMEHPQTVG
LNKVLGSNIQLGNACTNKLDQSKIISRWMNLQESVNVLFDSKTATVQSQREGSGICQLLE
KKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLRE
AIINGPDIHPGATHYSDKLSTVKLPSTEKARRAIARKLLSSRGATTELGKTCDINFEGKT
VHRHMRDGDVVLVNRQPTLHKPSLMAHIVRVLRGEKTLRLHYANCSTYNADFDGDEMNVH
FPQDEISRAEAYNIVNANNQYARPSNGDPLRALIQDHIVSSVLLTKRDTFLDKDHFNQLL
FSSGVTDMVLSSFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVLNQITKG
HPPFTVEKATKLPVDFFKCRSREVKPNSGDLTKKKKIDESWKQNLNEDKLLIRKNEFVCG
VIDKAQFADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQIHGFTCGVDDLIILKDMDE
ERTKQLQECENVGERVLRKTFGIDVDVQIDPQDMRSRIERILYEDGESALASLDRSIVND
LNQCSSKGVMNDLLSDGLLKTPGMNCISLMTISGAKGSKVNFQQISSHLGQQDLEGKRVP
RMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGY
LQRCLMKNLESLKINYDCTVRDADGSIIQFQYGEDGVDVHRSSFIEKFKELAINQDMVLQ
RCSEDMLSGANSYISDLPISLKNGAEKFVEAMPMNERIASKFVRQEELLKLVKSKFFASL
AQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAADIKTPIM
TCPLLKGKTKEDANDITGKLRKITVADIIKSMDLSVVPYTVYKNEVCSIHKLKINLYKPE
HYPKHTDITEKDWEETMTVVFLRKLEDAIEIHMKMLHRIRGICNDKGPEAGNETDNDDSV
SGKQNKDDGDDDGEGTEVDDLGSDAQKQKKQVTDEMDYEENSEDETNEPSSISGVEDPEM
DSENEDAEVSKEDTPEPQEEADVSKEETMEPQKEVKAVKNVKEQSKKKRRKFVGATSDRH
IFVRGEGEKFEVHFQFATDDPHILLAQIAQKTAQKVYIQDSGKIERCTVANCGDPQVIYH
GDNPKERREISNDEKKASPALHASGVDFPALWEFQDKLDVRYLYSNSIHDMLNVFGVEAA
RETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMGGIAESTSPFCRMTFET
ATKFIVQAATYGEKDTLETPSARICLGLPALSGTGCFDLMQRVEL
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atggctcacgttcaaaccacagagggagcttcccaggtggttgaatctgttagattcagt
ttcatgacagagcaagatgttcgaaagcatagttttctgaaagttacgagtcctatatta
ctcgataacgtgggcgaaccttatcctggtggtctctatgatcctaaacttggtcctata
gaggataaaaaagcttgtgatacatgtggtcagctcaatcttgcttgtccaggacattgt
ggtcatatcgagcttgtctatcctatttaccatcctttgctcttcaatcttctttacaat
tttttgcagaggacctgtttcatctgtcatcattttatggcaaaaccttacgatgttgaa
agagctgtttctcagctgaaactcatcattaaaggtgatatagtttctgcaaagcaattg
gagtccaacacccccactaagtcagattctagtgatgtaagctgtgaatcaggtgtaacc
actgattcatccgaaggatgtgaagattctgacatggaagatcagagatggacatctctt
cagtttgctgaagtcactgctgtcatgaagaattttatgaggttgtcatcaaagtcgtgt
aatagatgcaaagcagtaaatcctcaactagagaagcctatgttcggatgggttcgcatg
aaagcaatgaaaggatccgacattgtagctaatgtaattcgagggcttaagctaaagaag
tccactagcagtgttgaaaatccagatgactttgatgatagtggcatcgatgcattatca
gaagttgaagatggtgataaagagacaagagaaaagtctacagaagtagtgaaagagttt
gaagagcataacaatagttctaaaagagaccttttgccgactgaggtcagggaaatctta
aaagatctgtgggagaatgagcacgacttttgctccttcattggtgatctttggcagagt
ggatctgaaaaaattgactactctatgttctttttggagagtgttctagtgccccctatt
aaatttagaccttcaacaaaaggaggtgatagtgttatggaacatcctcaaaccgtagga
ctaaataaggtcttaggttccaatatacaactcgggaatgcgtgtactaacaaattagat
cagtctaagataatttctagatggatgaatcttcaagaatcagtcaatgtcttgtttgat
agcaaaactgcgacagttcaaagccagagagagggctctggaatatgtcaattgctggag
aagaaagagggactatttcggcaaaaaatgatgggaaagagagtgaatcatgcatgcaga
tctgtgatatctccagatccttatatcgctgttaatgacatcggaattcctccttgtttt
gctttgaaattgacgtatcccgagagggtgactccttggaatgtggagaagttaagggaa
gctatcattaatggtcctgatattcatcctggagctacacattactctgacaaattatct
acagtgaagttgccttctaccgaaaaagcacgaagagcaattgcaagaaaattactgtcc
tcacgaggagccactacagaacttgggaaaacttgtgatatcaactttgaaggtaaaact
gtccatcgacatatgcgagatggtgacgtcgtccttgtgaatcgtcagccaacattacat
aaacctagcttaatggcgcacatcgtccgtgttctaaggggggagaaaacacttcgtctc
cactatgcaaattgcagtacatacaatgcagattttgatggtgatgagatgaatgtgcat
tttccacaagatgagatttcacgtgctgaggcctacaatattgtcaatgctaacaaccaa
tatgctaggccctctaatggcgatcctcttcgagctttaattcaggatcatattgtcagt
tccgttttgcttactaaaagggacacatttttggacaaagatcattttaatcagcttctc
ttcagttccggtgtgactgacatggtactcagttctttttctggaagatctggcaagaaa
gtcatggtatcagcttctgatgcagaactgttgacagtcacgcctgctattttgaaacca
gtgcctctttggactgggaagcaggtcatcactgcagtgttgaatcagataaccaaaggt
cacccgccgttcaccgtagagaaagctaccaaacttccagttgatttcttcaaatgtaga
tctagagaagtaaaacctaacagtggagatttgaccaaaaagaaaaagattgacgagtca
tggaaacagaatcttaatgaagataaattgctcatcagaaaaaatgaatttgtctgcggt
gtgattgacaaggctcagtttgctgactatgggttggttcatacagtgcatgagctttat
ggttcaaatgctgcaggaaatctgctctccgtttttagtcgtctctttacagtctttctt
cagattcacggtttcacctgtggagttgatgatcttattattttaaaagatatggatgaa
gagaggacgaagcaacttcaagagtgtgaaaatgttggtgaaagagtactccgtaagacc
tttggcatagatgttgatgttcagatagatcctcaggacatgagatccagaatagaacga
attctttatgaggacggggaatctgctttggcatctttggacaggagcatcgtaaatgat
ctcaatcagtgttcaagcaagggtgtgatgaacgatttgctgtctgatgggttactgaaa
acacccggaatgaattgtatatcgctaatgactatatctggggctaagggcagtaaggtc
aacttccagcaaatctcttcgcatcttggccagcaagatttagaaggaaaaagagttccc
cgaatggtttctgggaagacattaccttgtttccatccatgggactggtcccctagagct
gggggatttattagtgacagattccttagtggtcttcgcccccaagaatattacttccat
tgcatggctggacgagaagggttagttgatactgcagtgaagacatcacgtagtgggtat
ctgcaaagatgcttgatgaaaaatcttgagagccttaaaatcaactatgattgtactgtc
cgggatgctgacgggtccatcattcagttccaatatggtgaagatggtgtggatgttcat
cggtctagctttattgaaaagttcaaagaactggcaataaatcaagatatggtccttcaa
agatgcagtgaagacatgctatctggagccaatagttacatcagtgatctgcctattagt
cttaagaacggagctgagaagtttgtagaggcaatgcctatgaatgaacgtattgcttct
aaatttgtgagacaagaagaactactgaagctggtgaagtcaaaattctttgcaagtctt
gcgcagccaggggagcctgtaggtgtacttgctgctcaatctgtaggagagccatcaaca
cagatgacgttgaatactttccatcttgctggacgtggagagatgaatgtgacacttgga
attccacgtttacaagagattttgatgacagctgcagcagacattaagacaccaataatg
acatgcccgttgctgaagggcaaaacaaaggaggatgcaaatgatatcactggtaagttg
aggaagattacggtggcagatataataaagagtatggacctttcagttgtaccatatacg
gtttataagaatgaagtttgtagtattcacaagcttaagataaatctctataagccagag
cattatccgaagcacactgatatcaccgaaaaagactgggaagagacgatgacggttgtg
tttttgaggaagttggaggacgctatagagatccacatgaaaatgctccatagaataagg
ggcatatgcaatgacaagggtccagaagctggaaatgaaactgataatgatgattctgta
agtggaaagcagaataaagatgatggtgatgatgatggcgagggtacagaggttgatgat
cttggttcagatgcacagaagcagaagaaacaagtaacagatgagatggattatgaagaa
aactctgaagatgaaacgaacgaaccatcgtcaatcagtggagtagaggaccctgagatg
gatagtgagaatgaggacgcagaagttagcaaggaagatactccggaaccgcaggaagag
gcagatgttagcaaggaagagactatggaaccacaaaaagaggtaaaagcggtaaagaat
gtcaaagaacagagtaaaaaaaagagacggaaatttgttggagctacaagtgacagacat
atcttcgtgagaggtgaaggagagaaatttgaggtccatttccagtttgctacagatgac
cctcatattttacttgcccagattgctcaaaaaacagcgcaaaaggtttacatccaggat
tctgggaagattgaacgatgcacagtggctaattgtggtgatcctcaggtgatctaccat
ggagacaatccaaaggagagaagagaaatatccaacgatgaaaagaaagcctcgccagct
ctccacgcatcaggagttgatttccctgcactctgggaattccaagataaacttgacgtc
aggtacttgtacagcaacagcattcacgatatgctcaacgtttttggagttgaagcagct
agagaaacaataatcagggaaataaaccatgtcttcaaatcatatggtatttctgtaagc
atcagacacttgaacctcattgcggattatatgaccttttccggtggataccgaccaatg
agccgtatgggaggaattgcagaatcaacttcaccattctgcagaatgacatttgaaaca
gccactaagttcattgtccaagctgctacttatggagaaaaggacacattagaaactccc
tctgctagaatctgtctcggcttgcccgcgctttcaggaaccggatgctttgatttgatg
cagagagtggagctctga
DBGET
integrated database retrieval system
