Arabidopsis lyrata (lyrate rockcress): 9312739
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Entry
9312739 CDS
T01578
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9312739
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9312739
03009 Ribosome biogenesis [BR:
aly03009
]
9312739
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
9312739
Spliceosome [BR:
aly03041
]
Complex A
U2 snRNP components
U2 related factors
9312739
Complex B
9312739
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
9312739
Ribosome biogenesis [BR:
aly03009
]
Eukaryotic type
90S particles
Helicases
9312739
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
ResIII
nSTAND3
Cas3-like_C_2
SRP54
T2SSE
AAA_30
NPHP3_N
AAA_7
PhoH
Motif
Other DBs
NCBI-GeneID:
9312739
NCBI-ProteinID:
XP_020882224
LinkDB
All DBs
Position
Unknown
AA seq
726 aa
AA seq
DB search
MGTERKRKISLFDVMDDPSAAAKNTKISGLADGGINSLINKWNGKPYSQRYYDILEKRRT
LPVWLQKEEFLKTLNSNQTLILVGETGSGKTTQIPQFVIDAVDAETSDKRRKWLVGCTQP
RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSPRTVLKYLTDGMLLREAMADPLLER
YKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQDYFSGAPLMKVP
GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKINKEVG
NLGDQVGPIKVVPLYSTLPPAMQQKIFDPAPEPVTEGGPPGRKIVVSTNIAETSLTIDGI
VYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGRTRPGKCFRLYTEKSFNND
LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEG
NLTKTGEIMSEFPLDPQMAKMLIVSPEFNCSNEILSVSAMLSVPNCFIRPREAQKAADEA
KARFGHIDGDHLTLLNVYHAFKQHNEDPNWCYENFINNRAMKSADNVRQQLVRIMSRFNL
KMCSTDFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEW
VIYNEYVLTSRNFIRTVTDIRGEWLVDVASHYYDLSNFPNCEAKRVIEKLYKKREREKEE
SKKNRK
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagagaaagaggaaaattagtctgttcgatgttatggacgatccgtctgct
gcggcgaagaacaccaaaatcagtggtcttgccgacggcggaatcaacagtctcatcaat
aaatggaacgggaagccttattcacagagatattatgacattctggagaaacggaggact
ctccctgtatggctgcagaaagaggagtttctcaaaactttgaacagcaatcaaactcta
attctggttggtgagaccggtagtggtaaaaccactcagattccacagtttgtgatagat
gctgtggatgctgaaacatcggataagcgtaggaagtggttggttggatgcacacagcct
cgtagagttgccgccatgtctgtgtcccgtcgtgttgctgaagagatggatgtaactatt
ggggaagaagttggttacagcatccgtttcgaggattgcagtagccccagaacggttctt
aagtacttgactgatggtatgctcctgagagaagcaatggcggacccgcttctagagaga
tacaaagtgattattctcgatgaggcccacgagaggactctagccacagatgtgctgttt
ggtcttctgaaagaagtgttgaaaaatagacctgatcttaagttagttgtgatgagtgca
actctagaagctgaaaagtttcaggattattttagcggtgctcctctgatgaaagttcct
ggtaggcttcatcctgttgagatcttttacactcaggagcctgagagggactatcttgag
gctgctattaggactgttgtccagattcacatgtgtgagccacctggtgatattcttgtt
ttcttaactggagaagaggagatcgaagatgcatgccgcaaaatcaataaagaggttggt
aatctcggagatcaagtggggcctattaaagttgtgccattgtattctactcttccacct
gcgatgcagcagaagatatttgatcctgctccagagccggtaacagaaggtggtcctcct
gggagaaaaattgttgtctcaactaacattgctgagacttctctaaccatagatgggatt
gtctacgtcattgatcctggttttgctaagcaaaaagtctacaaccctcgaatccgtgtt
gagtctttgttggtctccccaatttcaaaggcaagtgctcaccagagatctggtcgtgcc
ggtagaacacgccctggaaaatgtttcaggctttatacagaaaagagttttaataatgac
ttgcagccgcagacgtatcctgaaatattgagatcaaaccttgcaaacacagttttgacc
ttgaaaaaacttggaattgatgacttggtgcactttgattttatggatccccctgctccg
gaaacactgatgcgagccttagaagttttgaattacttgggagcattggatgatgaaggt
aacttgacaaagacaggtgagatcatgagtgagttccccttggatccacagatggcaaag
atgctcatagtcagtcctgaattcaactgctcaaacgagattctctcagtttcagccatg
ctctcagtaccgaattgctttattcggcctagagaggctcaaaaagcagcagatgaagct
aaagctaggtttggacacattgatggagatcacctcacattgttgaatgtctaccacgct
ttcaagcaacacaatgaagatccaaattggtgctatgaaaacttcatcaacaatagagcg
atgaaatctgcagacaatgttagacagcagctagttcggataatgtcaagattcaacctg
aagatgtgcagcactgattttaacagccgcgattactacatcaacataaggaaggccatg
cttgcaggttatttcatgcaagtggctcacttagaacgtactggccattacttgaccgtc
aaagacaaccaagtggttcatttgcatccatccaattgcttggatcacaaaccggagtgg
gtaatctacaatgaatatgttttgactagtcggaatttcataagaactgtgacagacatt
cgtggtgaatggctagtagatgttgcttctcattattacgatctttcgaactttcccaac
tgcgaagccaaacgtgtcatcgagaagctttataagaagagagaaagggagaaggaagag
agcaagaagaaccggaagtga
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integrated database retrieval system
