Arabidopsis lyrata (lyrate rockcress): 9312767
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Entry
9312767 CDS
T01578
Name
(RefSeq) LOW QUALITY PROTEIN: protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
9312767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aly04121
]
9312767
Ubiquitin system [BR:
aly04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
9312767
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
F-box-like
F-box
LRR_NXF1-5
LRR_8
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
9312767
NCBI-ProteinID:
XP_002878489
UniProt:
D7LTB8
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All DBs
Position
Unknown
AA seq
594 aa
AA seq
DB search
MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPAT
VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD
CLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESEVDDISGHWLSHFP
DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEEL
GTGGYTAEVRPDVYSGLSVALSGCKDLKCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT
VQSYDLVKLLSQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT
EQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL
DVGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC
DSLRKLEIRDCQFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE
RGPPDSRPESCPVERVFIYRTLAGPRFDMPGFVWNMDQDSTMRFXRKIITTNGL
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagcgaatagccttgtcgttcccagaagaggtgcttgagcatgtattctcgttt
attcagctggataaggataggaactcagtctctctggtgtgcaagtcatggtacgagatc
gagcggtggtgcaggaggaaagtcttcatcgggaactgttacgccgtgagtccagcgacg
gtgattaggaggttcccgaaagtaagatccgtggagctcaagggaaaacctcactttgct
gactttaatttggtacctgacggatggggaggttacgtgtatccatggattgaggctatg
tcgtcgtcttacacgtggcttgaagagataaggctgaagaggatggtggtgaccgacgat
tgcttggagctcatagccaagtcctttaagaatttcaaggttcttgtgctttcttcctgc
gaaggcttctccaccgatggtctcgctgctatcgctgccacttgcaggaatctgaaagaa
cttgatttacgagagagtgaggttgacgatattagtggccactggcttagccatttccca
gatacttacacatctttggtatcactcaatatctcatgcttagcatctgaggtcagtttc
tctgctctggaaaggttggtgactaggtgtcccaatctcaagtctctcaagcttaaccga
gctgttccccttgaaaaattggctactttacttcaaagagctcctcaattggaggaattg
ggcactggtgggtacactgcagaagtgcgaccagatgtttactctggtttatcggtagcg
ctctctggatgcaaggatttgaagtgcttatctggattttgggatgctgttcctgcctat
cttccagctgtttattcagtttgcagtcggcttacaactttgaatctgagttatgcaaca
gtccagagctatgatcttgtcaagctacttagtcaatgcccaaaactgcagcgcctctgg
gtgcttgactacatcgaggatgctggtcttgaggtgcttgcttcaacctgcaaggaccta
cgcgagctcagagtgtttccatctgagccttttgtcatggaaccaaatgtggcattgacg
gaacaggggcttgtctccgtctccatgggctgtccaaaactcgagtcggttctctacttc
tgccgtcaaatgaccaatgctgcattgataaccattgctaggaaccgtcccaacatgact
cgcttccgtttgtgcatcattgagccaaaagctccagactatctgactctagagccactt
gatgttggatttggagccatcgtagagcactgcaaagatctccgtcgcctctctctatct
ggcctcttgaccgacaaggtttttgaatacattgggacatatgccaagaagatggaaatg
ctctcagtggcatttgcaggagacagtgacttaggcatgcatcatgttttgtcggggtgc
gatagcctgaggaaactagagataagggactgccagtttggagacaaggcgcttttggcc
aatgcttctaagctggagacaatgcgatccctttggatgtcttcttgttccgtgagtttt
ggagcctgcaagttattaggacagaagatgccaaagctgaatgtggaagtcatcgatgaa
cggggtccaccggactcgagaccagagagctgccctgttgagagagtgttcatataccga
acattggctggtcctcggtttgacatgcctggcttcgtctggaacatggaccaagactca
acaatgaggtttnccaggaaaatcatcactactaacggattataa
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