KEGG   Arabidopsis lyrata (lyrate rockcress): 9312901
Entry
9312901           CDS       T01578                                 
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 7
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03082  ATP-dependent chromatin remodeling
aly03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    9312901
   03083 Polycomb repressive complex
    9312901
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:aly03036]
    9312901
Enzymes [BR:aly01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     9312901
Chromosome and associated proteins [BR:aly03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     9312901
   HDAC complexes
    Sin3A-HDAC complex
     9312901
    BRAF-HDAC complex
     9312901
    REST complex
     9312901
    SHIP complex
     9312901
    MiDAC complex
     9312901
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     9312901
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    9312901
  Chromatin remodeling factors
   NuRD complex
    9312901
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 9312901
NCBI-ProteinID: XP_020880662
LinkDB
Position
Unknown
AA seq 216 aa
MADSTSEHVIALKEAIHHDIIVKPGDNGPRILLPLSSPSDFENFHSTEYVEFLKSLTPET
ITILPSLKNLKQFNIDVDLDGPVFHNLFDYCRAYAGGTISAAAKLNRQEADIAINWAGGM
QNAKKDKASDFGYANDVVLGILELLKTFKRVLYVDIGFRHGDGVEEAFKDTDRVMTVYFH
KIGDSGDISDFGEGRGQYYSLNAPLKDGLDQGSKNP
NT seq 651 nt   +upstreamnt  +downstreamnt
atggcagatagcaccagtgagcatgttatagcattgaaagaagcgatacaccatgatatt
atcgtcaaacctggtgacaatggtccaagaattctactcccactaagctctccttccgat
ttcgaaaactttcactcgacggagtatgtcgagttcctcaaatccctcacgccagaaacc
ataaccatccttccgtctctcaaaaacctcaagcaattcaacatagatgtggacttggac
ggtcctgtcttccataacctcttcgattattgtcgtgcttacgctggtggtactattagc
gccgccgctaaattgaaccgtcaagaagcagatattgctatcaattgggccggtgggatg
caaaatgcgaagaaagataaggcttctgactttggctatgccaatgacgttgtgcttggg
attctcgagttgctcaaaactttcaagagagttctctacgtagatattggctttcgtcat
ggggatggagtggaagaagcatttaaggacactgatagagttatgactgtttatttccac
aaaattggggactccggagacataagtgactttggggaaggaagaggacaatattattca
ctaaatgcaccattgaaggatggtttagatcaaggttcaaagaatccctag

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