Arabidopsis lyrata (lyrate rockcress): 9313375
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Entry
9313375 CDS
T01578
Name
(RefSeq) endoribonuclease Dicer homolog 3 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
aly03036
]
9313375
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
9313375
microRNA pathway
RISC loading complex
9313375
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
PAZ
DEAD
Helicase_C
ResIII
COX5A
DND1_DSRM
Motif
Other DBs
NCBI-GeneID:
9313375
NCBI-ProteinID:
XP_020880391
LinkDB
All DBs
Position
Unknown
AA seq
1572 aa
AA seq
DB search
MHSSLEPEKMEENSQQGSNSLKRKSSEIDGDQILASVSSPTMVESNGSYELKVYEVAKNR
NIIAVLGTGIDKSVITKMLIKAMGCSDTDKRLIIFLAPTVNIVKQQCCEIRAQVNLKVEE
YFGAKGVDKWTSQRWDEEVSKHDILVMTPQILLDALRSAFLKLEMVCLLILDECHRTTGN
HPYAKLMKEFYHESTNKPKIFGLTASAVVRKGQVSELERLMDSKIFNSEEGKGVEKFAKA
VKEGPIFYDPSPFRSLELKEKLETSHLKFDTSLRRLQELEKGSFLNIDNKFETYQKRLSI
DYKEILHCLDNLGLICAHLAAEVCLEKISDTKEESETYKEWSMVCKEFLEDILSTIGVYL
QQEDKNSVDLQQNRLSAVNSGHVSPKLKELFHLLDSFRGEKQKQCLILVERIITAEVIER
FVKKEASLSYLNVLYLVGNNLSTNASAQKTQIEIPNLFHEGKVNLLFITDAVEEGFQVPN
CSCMVCFDLPKTVCSYSQSQEHAKQSNSKSIMFLERGNPKQRDHLYDLMRREVPIRDPEA
PNLKSCPPPVTNAHGVKEIGTMVIPDSNITVSEEAASTQTMIDPPSRNEQLPPCKKLRLD
NNLLQSNAKEKVASSKSKSSSSAAGSKKRKELHGTTCANALSGTWGENIDGAIFQAYKFD
FCCNISGEVYSSFSLLLESTLAEDVGNVEMDLYLVRKLVKASVSPCGQIRLSQEELVKGK
YFQQFFFNGMFGKLFVGSKSQGTKREFLLQTDTSSLWHPSFMFLLLPVETKDLASSATID
WSAINSCASIVEFLKKNSLLELQVSDGNQCNTSSDQEVLLDDKMEETNLIHFANASSDKN
SLEELVVIAIHTGRIYSIVEAVRDSSALSPFECDASSEYATYAEYFNKKYGIVLAHPNQP
LMKLKQSHHAHNLLVDFNEEMVVKAEPKAGNVRKKKPNIHAHLPPELLARIDVPRAVLKS
IYLLPSVMHRLESLMLASQLREEIDCSIDNFSISSTSILEAVTTLTCPEAFSMERLELLG
DSVLKYVASCYLFLKYPDKDEGQLSRQRQSIISNSNLHRLATNRKLQGYIRNGAFEPRRW
TAPGQFSLFPVPCKCGIDTREVPLDPKFFTENMTIKIGKSCDMGHRWTVSKSVSDCAEAL
IGAYYVSGGLTASLHMMKWLGVNVDFDPNLVVEAISRVSLRCYIPKDDELTELERKIQHE
FSAKFLLKEAITHSSVHESYSYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRSAC
VNNENFAQVAVKNNLHIHLQRCATVLENQINEYLMSFQKPDETGRSIPSIQGPKALGDVV
ESIAGALLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLPPYRELNELCDSLGYFFREKCSN
DGVKAQATIHLQLGDVLLTGDGSEQTNKLALGKAASHLLTQLEKRNISRKISIGDNQSSM
DVNLACNHSDRETPTSDSIEIQSIVIPVIGPINTKKGGPRGTLHEFCKKHLWPTPTFDTS
EEKSRTPFEFTDGDEKRTSFSSFTSTITLRIPNRGAVMYAGEARPDKKSSFDSAVVELLY
ELERRKIVTIQK
NT seq
4719 nt
NT seq
+upstream
nt +downstream
nt
atgcattcctcgttggagccggagaaaatggaggaaaattcacaacaaggaagcaattcg
cttaagaggaaatcctctgaaatcgatggagatcaaattcttgcttctgtctcttctcct
acgatggttgaatctaatggtagttatgaattgaaagtgtacgaggttgctaagaacagg
aacataattgctgttcttgggacaggaattgataagtcagtgatcactaagatgcttatc
aaagccatgggttgttctgatacagataaaagattgataattttcttggctccaactgtc
aatattgttaaacagcaatgctgtgagatcagagcgcaagtgaatttgaaggttgaagag
tactttggagctaaaggagttgataaatggacatctcagcgctgggatgaggaagttagc
aagcacgatattctggttatgactcctcaaatactgttggatgcccttagaagtgcattt
ctgaaactagagatggtatgtcttctaatattagacgaatgccaccgcaccactggtaat
catccctatgcaaagttaatgaaggaattctatcacgaatccactaacaaaccgaagata
tttggattgacagcatcagccgtcgttagaaaaggtcaagtatcagaacttgagagactc
atggactcaaagatttttaattctgaagaggggaaaggggtagaaaagtttgctaaagca
gtaaaagaaggtccaatattctatgacccatcaccattccgtagtttggaattgaaagaa
aagttagagacttcacacctcaagtttgatacttctcttagaaggcttcaagagttggaa
aaaggcagttttctcaacattgataataagtttgagacatatcaaaagagattgtccatc
gactacaaagagattttgcattgccttgataatcttggcctgatttgcgcacacttggcg
gctgaagtctgcttggagaaaatctcagatacgaaagaggaaagtgaaacttataaagaa
tggtcaatggtgtgcaaggaatttctagaggatattttatccacaattggggtgtatttg
cagcaagaagataagaattcggtagatttgcagcaaaaccgtctgtcagcagtaaattct
ggacatgtatctccaaagttaaaagaactctttcatctattggattcatttagaggtgaa
aagcaaaaacagtgccttattttagttgagagaattataactgcggaagtgatcgaaaga
ttcgtgaagaaagaagcctctttatcttacctaaatgtcttgtatttagtcggaaacaac
ctctccaccaatgcatcagcacagaaaacgcaaattgaaatccctaatttatttcatgag
ggcaaggtgaatcttttgtttatcacggatgcggttgaagagggatttcaggttccaaat
tgctcatgcatggtgtgttttgacctgcccaaaacagtgtgtagttactcgcagtctcaa
gaacatgccaaacagagtaattctaagtctatcatgtttcttgaaagggggaacccgaaa
caaagagaccatctgtatgaccttatgcgaagagaagtcccaattcgagatccagaagct
ccaaacttgaaatcgtgtccacctccagtgacaaatgcccatggcgtgaaggagattgga
accatggttatcccagattctaacataactgtatctgaggaagcagcttccacacaaact
atgattgatcctcctagcagaaatgagcagttaccaccatgtaagaagttacgcttggat
aacaatcttttacaatccaacgccaaagagaaggttgcctcttctaaaagtaaatcatct
tcatcggctgcaggttcaaaaaaacgtaaggagttgcacggaacaacctgtgcaaacgca
ttgtcaggaacctggggagaaaatattgatggcgccatctttcaggcttataagtttgac
ttctgttgtaatatttctggcgaagtatactcgagtttctctcttttgcttgagtcaaca
ctcgccgaggatgttggtaatgttgagatggacctttacttggtcaggaagcttgtgaag
gcttctgtctcaccttgtggccagatacgtttgagtcaagaggagttggtcaaaggaaag
tattttcagcagtttttctttaatggcatgtttggaaagttgtttgttggatctaagtca
cagggaacaaagagagaatttttgcttcaaactgacacaagttctctttggcacccttcc
tttatgtttctactgctaccagttgaaacaaaggatctagcttcgagtgcgacaattgat
tggtcagctatcaactcctgtgcctcaatagttgagttcttgaagaaaaattctcttctt
gaacttcaggttagtgatgggaatcagtgcaacacctcatccgatcaggaagtcttactt
gacgataaaatggaagaaacgaatctgattcattttgccaacgcttcgtctgataaaaat
agtcttgaagaacttgtggtcattgcaattcatactggaaggatatactctatagttgaa
gcggtaagggattcttctgctctgagcccgtttgagtgcgacgcctcgtcagaatatgct
acttatgcagaatattttaataaaaagtatgggattgttttggcgcacccaaatcagccg
ttgatgaagttgaagcagagtcaccatgcgcacaaccttttagtcgacttcaatgaagag
atggttgtgaaggcagaaccaaaagctggcaatgttagaaaaaaaaaaccaaatatccat
gcacatttgcctccagagcttttggccagaattgatgtaccgcgtgctgttctaaaatca
atctacttgctgccctcagtgatgcaccgcctagagtctctaatgttggctagccagctt
agggaagagattgattgtagcatcgataacttcagtatatcaagtacatcgattcttgaa
gcagtaacaacacttacatgccccgaagcattttcaatggagcggttggaactgctgggg
gattcagtcttgaagtatgttgcgagctgttatctattccttaagtatcctgacaaagac
gagggacaactatcacggcagaggcaatcgatcatatctaactcaaatcttcatcgcttg
gcaaccaatcgcaaactacagggatacataagaaacggcgcttttgaaccgcgtcgctgg
actgcacctggtcaattttctctttttccagttccttgcaagtgtgggattgatactaga
gaagtaccattggacccaaaattcttcacagaaaacatgactatcaaaatcggcaagtct
tgcgacatgggtcatagatggacagtttcaaaatctgtatcagattgcgctgaggccttg
attggtgcctattatgtaagtggtggattgactgcttctctccatatgatgaaatggctc
ggtgttaacgtcgattttgacccaaacctagtcgttgaagccatcagtagagtttctcta
cggtgttacatccctaaagacgatgagctcacagagttggagagaaagatccaacatgaa
ttctctgcaaagttccttttaaaagaggctatcacacactcctctgttcatgaatcctat
tcatacgagagattggagtttcttggcgattctgtactggattttctaatcactcgtcat
ctttttaacacctacgaacaaacggggcctggagagatgactgatcttcgttctgcatgt
gtaaataatgaaaattttgcgcaagttgcagtgaaaaataatctgcatatccaccttcaa
cgctgtgctacggttcttgagaatcaaataaacgagtatctgatgtccttccaaaaacca
gatgagacaggtagatcaatcccttcaatacagggccctaaggctcttggagatgtggtg
gagagtatcgctggggcattgctgatcgatacaaggttagatctcgatcaagtgtggaga
gtctttgagccgttgctttctccacttgtaactccagataaacttcagcttcctccgtac
cgggagctcaatgagctatgcgactctcttgggtatttcttccgagagaaatgttcaaat
gatggtgtcaaggcacaagccacgatccacttgcagctgggcgatgttcttctaactgga
gatggatctgaacagacaaataaactggccttgggaaaagcagcttcacatctgcttacg
caacttgagaagagaaacatttcacgtaaaatttcgatcggggataatcaaagttccatg
gatgtcaatcttgcttgcaatcatagcgacagagaaactccgacttcagattctattgaa
atccagagtatagtgattccagttattggacctataaacacgaagaaaggcgggcctcgt
ggaactctacatgagttctgcaagaagcatctttggccaacgcctacttttgatacctcg
gaagagaaatccagaactccgtttgaattcacagatggcgatgagaagcgaactagcttc
agcagtttcacatcgaccataaccctaaggatacccaaccgtggggctgtgatgtatgct
ggagaagccaggcctgacaagaaaagttccttcgactctgcagtcgtggaattgctttat
gagctcgagcgccgcaagatcgtcacaatacaaaagtag
DBGET
integrated database retrieval system
