Arabidopsis lyrata (lyrate rockcress): 9313397
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Entry
9313397 CDS
T01578
Name
(RefSeq) probable CCR4-associated factor 1 homolog 9
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9313397
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9313397
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
9313397
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
9313397
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
ScoMcrA_N
DUF4857
Motif
Other DBs
NCBI-GeneID:
9313397
NCBI-ProteinID:
XP_002877329
UniProt:
D7LNQ2
LinkDB
All DBs
Position
Unknown
AA seq
280 aa
AA seq
DB search
MAIIKSNTYNKPCGGITVVTREVWAENLESEFELISEIIDDFPFISMDTEFPGVIFKSDL
RFTNPADLYSLLKANVDALSLIQVGLTLSDANGNLPDLGENHRGFIWEFNFRDFDVARDA
HAPDSIELLRRQGIDFERNCRDGVDSERFAELMMSSGLVCNEDVSWVTFHSAYDFGYLMK
ILTRRELPSALGEFKRVMRVLFGERVYDVKHIMKFCERRLYGGLDRVARTLEVNRAVGKC
HQAGSDSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF
NT seq
843 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcatcaaatcaaacacatataacaaaccatgtggcggtatcaccgtcgtgact
cgtgaagtgtgggcggagaatctcgaatcagaatttgagttaatcagtgaaatcatcgac
gattttccatttatctcaatggacactgaatttcccggcgtgattttcaaatccgatctc
cgatttacaaatcccgccgatctctatagtcttcttaaagctaacgtggatgctcttagt
ttaattcaagtcggtctcactctctctgatgctaacggtaacctcccagatctcggtgaa
aatcaccgaggattcatctgggagtttaatttccgagactttgatgtggcgcgtgacgca
cacgcgcctgattcgatcgagttacttcgtcggcaaggtatcgatttcgagcggaattgt
cgcgacggtgttgattcggagaggtttgcggagttgatgatgtcgtcggggcttgtttgt
aatgaggatgtgagctgggtgacgtttcatagcgcgtatgatttcggttacttgatgaag
attctcacgcgccgagaattgcctagcgcgttgggtgagtttaagcgcgtgatgagagtg
ttgtttggtgagcgtgtgtatgatgtgaagcatatcatgaagttttgtgagaggagattg
tatggcggtttagaccgggttgcaagaacgcttgaggttaaccgggcggttgggaaatgt
catcaagccggttcggatagtttgcttacgtggcatgcgtttcagaggatgagggatttg
tattttgttcaagatgggccggagaaacatgctggggttttgtatgggcttgaggttttt
taa
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