Arabidopsis lyrata (lyrate rockcress): 9313558
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Entry
9313558 CDS
T01578
Name
(RefSeq) U-box domain-containing protein 13
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
9313558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aly04121
]
9313558
Enzymes [BR:
aly01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
9313558
Ubiquitin system [BR:
aly04121
]
Ubiquitin ligases (E3)
U-box type E3
9313558
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Arm
U-box
ARM_ARMC5
HEAT_2
Neurochondrin
MCAfunc
zf-RING_UBOX
KAP
zf-Nse
HEAT_EZ
zf-C3HC4_4
Arm_2
MLKL_N
RPW8
zf-C3HC4
zf-NOSIP
zf-C3HC4_2
Nucleoporin_C
Motif
Other DBs
NCBI-GeneID:
9313558
NCBI-ProteinID:
XP_002877490
UniProt:
D7LN13
LinkDB
All DBs
Position
Unknown
AA seq
660 aa
AA seq
DB search
MEEEKASAAQSLIDVVNEIATISDYRITVKKLCYNLARRLKLLVPMFEEIKESNEPISED
TLSTLVNLKEAMCSAKDYLKFCSEGSKIYLVMEREQVTSKLMEVSVKLEQSLSQIPYEDL
DISDEVREQVELVLSQFRRAKGRVDVSDDELYEDLQSLCNKSSDVDACQPALERVAKKLQ
LMEIPDLAQESVALHEMVASSGGDAGENIEEMAMVLKMIKDFVQTEDDNGEEQKVGVNSR
SNGQTSTAASQKIPVIPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKT
QQALTSTTLTPNYVLRSLIAQWCEANDIEPPKPPSSLRPRKVSSFSSPAEANKIEDLMWR
LAYGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLN
LSICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPP
LVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAI
LAILSSHPEGKAIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLG
LMGPLIDLAGNGTDRGKRKAAQLLERISRLAEQQEETAQSQPEEEAEPTHSVSTTEAADT
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagagaaagcttctgctgcacagagcttaatcgatgtagttaacgagattgcg
acgatttctgattatcgtattacggtgaagaagctttgttataatctagcgaggagattg
aagctgcttgttcctatgtttgaggaaattaaagagagtaacgaaccgatcagcgaagat
acgttgagtactttggtgaatttgaaggaagctatgtgttcagcgaaggattatctcaaa
ttttgtagcgaagggagcaagatttatctggtgatggagagggaacaagtgacaagtaaa
ttgatggaggtgtctgttaagttagaacaatctttgagccagattccgtatgaggatctc
gatatatcggatgaagttagagaacaggttgagctggttctcagccagtttcggcgggct
aaaggaagagtagatgtctcagacgatgaactatatgaagatcttcagtcgctgtgcaac
aaaagtagtgatgtagatgcttgtcagcctgccctggagcgggttgcgaagaagttacag
ttgatggagattcctgacctagctcaagaatcagtggctctgcatgaaatggttgcttca
agcggtggagatgctggtgaaaacattgaggagatggcaatggtactgaagatgattaag
gattttgtgcagacggaggatgacaacggtgaggagcagaaagtaggggttaactcgaga
agcaatggacaaacttctacggcagcgagtcagaagatacccgtaattcctgatgatttc
cgctgtccgatatcgctggaaatgatgagagatccagttattgtttcatcagggcagacc
tacgaacgcacctgcattgagaagtggatagaaggtggacactcaacatgtccaaaaaca
cagcaggcgctaacaagcacaaccctcacaccaaactatgttctccgtagtctcatagct
cagtggtgcgaggccaacgatattgagcctccaaagcctccaagcagtttaagacccaga
aaagtatcgtccttctcgtctccagcagaagcaaacaagattgaagatcttatgtggaga
ctcgcctacggaaaccccgaggaccaacgatctgcagctggggaaatccgccttcttgca
aaacgaaatgcagacaaccgcgtggctatagctgaagctggagccatacctcttctcgta
ggccttctctcaactcctgattctcgtatccaagaacattcagtaacagctcttctaaac
ctctccatatgtgagaacaacaaaggagccattgtttcagctggagctattcctggtata
gttcaagtgctcaagaaaggaagcatggaggccagagagaatgcggcggccacactgttc
agtctatcagtgattgatgaaaacaaagtgactatcggtgccttgggagcaattccgccg
ctcgttgtattacttaatgaaggtacacaaagaggcaagaaagatgctgctactgcactc
tttaacctctgtatataccaaggaaacaaaggaaaagccatacgtgcaggagtgattccc
acgttgactagactcttgacagagcccggaagcggaatggtcgatgaggcactcgcgatt
ttggcgattctctctagccaccccgaagggaaagcaatcataggatcctctgatgcagtc
ccaagtctggttgagtttatcagaactggctcgcctagaaacagagaaaacgcagctgcg
gttctagtccacctctgttcaggagacccacaacatcttgtcgaagcgcagaaactcggc
cttatgggtccattgatagatttggctggaaatgggacggatagagggaaacgaaaagca
gctcagttgcttgaacgcatcagccgtctcgccgaacagcaggaggaaacggctcagtca
caacccgaagaagaagctgaaccaacacattcagtatccactacagaagctgcagatact
taa
DBGET
integrated database retrieval system
