Arabidopsis lyrata (lyrate rockcress): 9313659
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Entry
9313659 CDS
T01578
Name
(RefSeq) probable cyclic nucleotide-gated ion channel 16
KO
K05391
cyclic nucleotide gated channel, plant
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
9313659
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
aly04040
]
9313659
Ion channels [BR:
aly04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
9313659
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
UBM
Motif
Other DBs
NCBI-GeneID:
9313659
NCBI-ProteinID:
XP_002877591
UniProt:
D7LRH9
LinkDB
All DBs
Position
Unknown
AA seq
704 aa
AA seq
DB search
MSNLHLYTSARFRNFPTAFSLRHHHNDPNNQRRRSIFSELRDKTLDPGGDLITRWNHIFL
ITCLLALFLDPLYFYLPIVQAGTACMSIDVRFGIFVTFFRNLADLSFLIHILLKFKTAFV
SKSSRVFGRGELVMDRREIAIRYLKSEFVIDLAATLPLPQIMIWFVIPNAGEFRYAAHQN
HTLSLIVLIQYVPRFLVMLPLNRRIIKATGVAAKTAWSGAAYNLVLYLLVSHVLGSVWYV
LSIQRQHECWRRECIKEMNATHSPSCSLLFLDCGSLQDPGRQAWMRITRVLSNCDARNDD
DQHFQFGMFGDAFTNDVTSSPFFDKYFYCLWWGLRNLSSYGQSLAASTLSSETIFSCFIC
VAGLVFFSHLIGNVQNYLQSTTARLDEWRVRRRDTEEWMRHRQLPEELQERVRRFVQYKW
LTTRGVDEEAILRALPLDLRRQIQRHLCLALVRRVPFFAQMDDQLLDAICERLVPSLNTK
DTYVIREGDPVNEMLFIIRGQMESSTTDGGRSGFFNSITLRPGDFCGEELLTWALVPNIN
HNLPLSTRTVRTLSEVEAFALRAEDLKFVANQFRRLHSKKLQHAFRYYSHQWRAWGTCFI
QAAWRRYMKRKLAMELARQEEEDDYYYDDDGDYQYEENMPESSNHGDENSNNNQNLSATI
LASKFAANTKRGVLGNQRGSTRIDPDDPTLKMPKMFKPEDPGFF
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacctccacctctacacctccgcacgcttccgcaatttcccgacggcattctct
ctccgtcaccaccacaacgaccccaacaaccaacgccgccgatccatcttctccgagctc
cgtgacaaaaccctcgaccctggcggtgacctaatcacgagatggaaccacattttcctc
atcacctgcctcctcgctctcttcctcgatcctctctacttctatcttcccattgtccaa
gcaggaaccgcatgcatgtccatcgacgtccgtttcggcattttcgtcacattcttccga
aacctagccgatctctccttcctcatccacattctcctcaaattcaaaaccgcttttgtc
tccaaatcctctagagtctttggtcgtggagagcttgtcatggaccgccgtgaaatcgct
atccgttatctcaaatctgagtttgtaatcgacctagccgccacccttcctcttcctcag
ataatgatttggtttgtgataccaaatgctggagaattcagatacgcagctcaccagaac
cacacactttccttgatcgtccttatacaatatgtgcctcgcttcctcgtcatgcttcct
ctcaaccgtcgaatcattaaagccaccggagtcgcagccaaaacagcctggtccggtgca
gcctacaatctcgtcctctacttacttgtgagccacgttcttggatcggtttggtacgtt
ttatcgatccagagacaacacgaatgctggagaagagagtgtattaaagagatgaatgca
acgcattcaccatcttgtagtctcttgtttctagactgtggatcgttgcaggatccaggt
agacaagcttggatgcggatcactcgggttctgtcaaactgtgatgcacgcaatgacgat
gaccaacattttcagtttggtatgttcggtgatgcgttcactaatgatgtcacttcctct
cctttctttgataaatacttctactgtctttggtggggtctccgtaacctcagttcctat
ggacagagtcttgcagcaagtacactgagtagtgagactatattcagttgtttcatttgt
gtcgcgggtctcgttttcttctcccatctcattggaaatgttcagaactatctgcaatcg
acgactgctaggctagacgaatggagagtcagaagaagagacacagaggaatggatgcga
cataggcaattgccagaagagttacaagagcgtgtaaggcgattcgtccaatacaaatgg
ctaacgactcgtggagtcgacgaagaagccattctacgggctctaccgttggatcttcgc
cgccagatccaacgacatctctgtcttgccctcgttcgccgtgtgccattctttgcgcag
atggatgaccagctcttggatgcgatatgtgagcgcctagttccgtccttgaacacaaaa
gacacctatgttatacgcgaaggcgatcctgtgaacgagatgcttttcatcattagaggt
cagatggagagttcaactacagatggtggacggtcagggttctttaactccatcacgctt
agaccaggagatttctgcggtgaagagcttttaacctgggctttagtgccaaacattaat
cataatctcccattgtccacgagaactgtgaggactctctccgaagtagaggctttcgct
ctccgagcagaggacttgaagttcgtagctaaccaattcagacgtcttcacagcaagaaa
ctccaacatgctttcagatactattcgcatcaatggagagcatggggaacttgttttata
caagctgcatggagacgatacatgaagaggaagttggcaatggagttagctagacaagag
gaagaagacgattactattatgacgatgatggagactatcaatacgaagagaacatgcct
gaaagtagtaaccacggagacgaaaacagcaacaataatcagaatttgagtgcgacaata
ttagcgtctaagttcgcagctaatacgaagagaggtgttttagggaaccaaagagggtct
acaagaattgatcctgatgatccaactttgaaaatgcctaaaatgtttaaaccagaggat
ccagggttcttctga
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