KEGG   Arabidopsis lyrata (lyrate rockcress): 9313723
Entry
9313723           CDS       T01578                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:aly00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:aly03009]
    9313723
Ribosome biogenesis [BR:aly03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    9313723
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd EIF3I Beta-prop_EML WDR55 Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd WDR90_beta-prop_4th NBCH_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_IFT140_1st Beta-prop_DCAF4 ANAPC4_WD40 Beta-prop_HPS5 Beta-prop_VPS8 Beta-prop_WDR75_1st Beta-prop_LRRK2 WD40_MABP1-WDR62_1st Beta-prop_IP5PC_F Beta-prop_Vps41 Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_SCAP Beta-prop_RIG_2nd Beta-prop_SPT8 WDR54 Beta-prop_DCAF12 VPS8_N WD40_RFWD3 Beta-prop_BBS7 DUF465
Other DBs
NCBI-GeneID: 9313723
NCBI-ProteinID: XP_002875954
UniProt: D7LSF3
LinkDB
Position
Unknown
AA seq 438 aa
MEISVIASSSIDEGIGSWDLKTGKEQLRFKQCASPAHGLTAVGEKFLASSQLRKESTSSG
SIFYWSWTKPQVEVRSFPVEPIKALVANNEGTYLVGGGSSGDIYLWEVATGKLLKKWHGH
YRSVTCLVFSGDDSLLISGSQDGSVRVWSLIRLFDDFPRQQGKTLYEHNFNEHTMSVTDI
VIDYGGCNAMIISASEDRTCKVWSLSRGKLLKNIIFPSAINALALDPGGYVFYAGGRDGK
IYIGAINATSEYGTQVLGSVSEQSKAVTCLAYCTEGNLLISGSEEGVVCVWDPKSRRPVR
TLGRGKGKGPPVNNIQIVRKTIVDNSNKTQSSWKRRGSLMPPPLEKYERSGEDTMDGIVT
VDPPPFSDVPVYSSFLSADLIDEQVRELQQQGSAATEIEMERLKLEYKRSLQMNDQWQKN
YENLLQVVMEEEQIGGSN
NT seq 1317 nt   +upstreamnt  +downstreamnt
atggagatttctgtaatcgcttcttcgtcaatcgatgaaggaattggaagctgggatctc
aaaaccgggaaagagcagcttcgtttcaagcagtgtgcttctccggcgcatggtctcacc
gccgtcggcgagaaatttctcgcctcctctcagctccgtaaagaatctacttcttctggc
tcgattttttactggtcttggactaagcctcaagttgaagtgaggagctttccagtggaa
ccaataaaggctcttgtagcaaacaatgaaggaacttacttagttggtggtggatcctcc
ggagatatttacctttgggaggttgcgactgggaagttgcttaagaagtggcatggtcat
tatcgttctgtgacatgtttggtgttctctggagatgattctttgttgatttcaggatct
caagatggatctgttagagtttggtctcttataaggctatttgatgatttcccgaggcag
caagggaaaactctttatgaacataattttaatgagcatacaatgtctgtgactgacatt
gttattgattatggaggctgcaatgctatgataatttctgcttcggaagatcggacttgc
aaggtttggagcttgtcaagagggaaattgttgaaaaatatcatttttccttcagccatc
aatgcactcgcattggaccctggcgggtatgtgttctatgctggtggtagagatggcaaa
atttatatcggtgccatcaatgccacgagtgaatatgggacacaagttctaggttcagta
tccgaacaaagcaaagctgttacttgcttagcatattgcacagagggaaaccttttaatt
tctggatcagaagaaggtgtggtttgtgtttgggatcccaaatcgcgtcgccctgttcgt
actctcggccgtggaaaaggaaaaggtcctcctgtgaacaatattcaaattgttagaaaa
acgattgttgataattccaacaaaacacaatcttcctggaaaagacgtgggtctttgatg
ccaccgcctttggaaaaatatgaaagatcaggagaagatactatggatggtatcgttacc
gttgatccgcccccattttctgatgttcctgtttactcttctttcctcagcgctgacctt
attgacgagcaagttagagaacttcagcaacaaggctctgcagcaacagagatcgaaatg
gaaagactgaaacttgaatacaaaagatctttacagatgaatgatcaatggcagaagaat
tatgagaatttgcttcaggtggttatggaagaagaacaaatcggtggttccaattga

DBGET integrated database retrieval system