Arabidopsis lyrata (lyrate rockcress): 9313970
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Entry
9313970 CDS
T01578
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013
Nucleocytoplasmic transport
aly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
9313970
03015 mRNA surveillance pathway
9313970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9313970
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
9313970
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
9313970
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
9313970
NCBI-ProteinID:
XP_002876189
UniProt:
D7LUE8
LinkDB
All DBs
Position
Unknown
AA seq
495 aa
AA seq
DB search
MADTVETVPTVESSSSSSVEASISTEKTEPTTEKKKWGDVEDDDDEEEAVSELNSLSINE
EEKRDSVLEEPEDSNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAI
SLPMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQALCICPTRELANQNMEV
LQKMGKYTGITAELAVPESTRGASPAPRRAPVSAHVVIGTPGTLKKWMAFKKLGLNHLKI
LVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQVLLFSATFNETVKDFVARTVKDPNQL
FVKREDLALDSVKQYKVVCPKEKNKIEVIKDQIMELGDIGQTIIFVKTKASAHKVHKALA
EMGYDVTSVHGNLSESDRDKIVKEFKDCLTQVLIATDVIARGFDQQRVNLVVNYNLPTKY
DTGEPDYEVYLHRVGRAGRFGRKGAVFNLLLDDGWDKEVMEKIEKYFEANVKEIKSWNSE
EEYKSALKEAGLLDQ
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggcggatactgtagagacagttcccaccgttgagtcatcttcatcctcctccgttgaa
gcatctattagcaccgagaagactgagcccacgacggagaagaaaaagtggggcgatgtt
gaggatgatgatgatgaagaggaagctgtatcggagcttaattctttgagcattaatgaa
gaagagaaacgtgattctgtgcttgaggaacctgaagattcaaacatcaaagctgttact
tctggtgacacgccatatacatcagcaagtagatttgaagacttgaacttgtcacctgaa
ttgatgaaaggcttgtatgttgagatgaaattcgaaaagccgagcaagatccaagcaatc
agtttgccgatgattatgacgccgcctcacaagcatttgattgcccaggcgcataacgga
tctggaaagacaacttgtttcgttcttggaatgttgagtcgggttgatccgacacttaga
gagcctcaagcgctctgtatttgtcccactagagaattagctaatcagaatatggaagtt
cttcagaagatggggaagtatactgggatcactgctgagttggctgtgccagagtcaacg
agaggcgcatcaccagccccaagacgagctcctgtttctgctcatgttgtgattggtacc
cctggaacgcttaagaagtggatggcttttaagaaactaggtctaaatcatttgaagatt
ctggtttttgatgaggctgaccatatgcttgctacggatggctttagggatgattccttg
aagataatgaaagacattgggagagttaatcccaatttccaggttcttcttttctcggca
acttttaacgaaactgtcaaagattttgttgcaaggacagtcaaagatcccaaccaattg
tttgtcaaaagagaggatctggctttggactcagtgaagcagtataaagttgtttgccca
aaggagaaaaacaagatcgaagtcatcaaggatcagattatggagcttggggatattggg
caaaccattatctttgtgaaaacaaaagcgtctgctcacaaggtacacaaagcccttgcg
gaaatgggatatgacgttactagtgtccatggtaatctgtctgaatcggacagggataag
atagttaaagagtttaaagattgccttactcaagtgctcattgctaccgatgtcattgca
agaggttttgaccaacagcgggtgaatttggttgtcaattataatcttcccactaaatat
gacaccggagagccagattatgaggtctaccttcacagggttgggagagctggccggttt
ggtcgtaaaggagcggtattcaacttgctgcttgatgatggctgggataaagaggtgatg
gagaagatcgagaagtattttgaagcaaatgttaaggagatcaagtcgtggaactcagag
gaagagtataagagtgcattaaaggaagctggcctgctcgaccagtga
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