Arabidopsis lyrata (lyrate rockcress): 9314093
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Entry
9314093 CDS
T01578
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9314093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9314093
03041 Spliceosome [BR:
aly03041
]
9314093
03036 Chromosome and associated proteins [BR:
aly03036
]
9314093
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
9314093
Spliceosome [BR:
aly03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
9314093
Complex B
9314093
Complex C
U2 SnRNP specific factors
9314093
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
9314093
TFTC complex
9314093
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
Motif
Other DBs
NCBI-GeneID:
9314093
NCBI-ProteinID:
XP_002878025
UniProt:
D7LV21
LinkDB
All DBs
Position
Unknown
AA seq
559 aa
AA seq
DB search
MYLYSLTLQQATGIVCAINGNFSGGKTQEIAVARGKILDLLRPDENGKIQTIHSVEVFGA
IRSLAQFRLTVTPLSYETLEFAAPFSSDQCAEGVVSVAGDALRIFMIDRLGETFNETVVP
LRYTPRKFVLQPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQMENGA
DDEDKEDPLSDEQYGYPKAESEKWVSCIRILDPKTATTTCLLELQDNEAAYSVCTVNFHD
KEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVEEGKSLELLHKTQVEGVPLALCQFQG
RLLAGIGPVLRLYDLGKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRD
ENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKW
EQGKLNGAPNKVDEIVQFHVGDVVTCLQKASMIPGGSESIMYGTVMGSIGALHAFTSRDD
VDFFSHLEMHMRQEYPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDLQRKIADEL
DRTPAEILKKLEDARNKII
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtatctgtacagtcttactctgcagcaggcgaccggaatcgtctgcgccatcaatggg
aacttctccggcgggaagacacaggagattgcggtagctcgtgggaagattctggatctt
ctccgtccggacgagaacggtaagatccagacaatacactctgtggaagtattcggtgca
attagatctttagctcagtttaggttgactgtgacgcctctgtcttacgagactttggaa
tttgctgcccccttttcatctgatcagtgcgctgaaggtgttgtctctgtcgcaggggat
gctctgagaattttcatgattgatcgtcttggtgaaacgttcaacgaaacagtggtccct
ctgaggtacacgcctagaaagtttgttctccaacccaagcggaagttgttggttattatc
gagagtgaccagggagcattcaccgcagaagagcgtgaagctgcaagaaaggagtgcttc
gaggctggtggagtgggagaaaatggcaatggcaatgcagatcagatggagaatggtgcg
gatgatgaagataaggaagacccgctttctgatgagcagtacggttatccaaaagcagag
tctgaaaagtgggtttcttgcatcagaattcttgatcccaagacagctacgacaacttgt
ctcctggaacttcaagacaacgaagctgcatacagtgtctgtacggtgaatttccatgat
aaagagtatggtacattgttggctgttggtacagtcaaagggatgcagttctggcccaaa
aagaatctagtggctgggttcatacatatttataggtttgtggaggaagggaaatctctt
gagcttcttcataagacgcaagtagaaggtgttcctcttgctctgtgccagttccaagga
agactgctggcagggatcggacctgtcctcagattgtatgatttggggaaaaagagactg
cttaggaaatgtgaaaacaagctctttccaaacaccattatctctatccaaacttaccgt
gaccgtatatacgttggtgacattcaggagtctttccattactgcaagtacaggcgcgac
gagaatcagctatacatatttgcggatgactgcgtgccgaggtggctgacagcatcgcac
catgtggatttcgataccatggcaggtgcagataagtttgggaatgtgtattttgtgcgg
ttgcctcaggatctgtctgaggagatagaagaagacccgacaggcgggaagataaagtgg
gagcaaggaaagctgaatggagcaccgaacaaagtggatgagatagtacagttccatgtt
ggggacgtagtgacgtgcttgcagaaagcttcgatgatcccaggtggatcggaatccata
atgtatggaacagtgatgggtagcataggggcattacatgctttcacatcgcgtgatgat
gtggatttcttctctcatctggagatgcacatgaggcaggagtatcctcctctctgcggg
agagaccacatggcttacagatctgcatattttccggtcaaggacgtgatagatggagat
ctgtgtgagcagttcccgacactcccaatggacttgcagaggaaaatagcagacgagttg
gatcgaacacctgcggagattctgaagaagctcgaagacgcaaggaataagatcatttaa
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integrated database retrieval system
