KEGG   Arabidopsis lyrata (lyrate rockcress): 9314186
Entry
9314186           CDS       T01578                                 
Name
(RefSeq) aladin
  KO
K14320  aladin
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    9314186
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aly03019]
    9314186
Messenger RNA biogenesis [BR:aly03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     9314186
SSDB
Motif
Pfam: WD40_WDHD1_1st ANAPC4_WD40 WD40 WD40_CDC20-Fz Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_CAF1B_HIR1 WD40_Prp19 Beta-prop_EML_2 WD40_MABP1-WDR62_1st
Other DBs
NCBI-GeneID: 9314186
NCBI-ProteinID: XP_020880747
LinkDB
Position
Unknown
AA seq 447 aa
MASFPHPGSVTVCEINRDLITAQNLSDERALETYGKVLGMVFSPVSFDSTPSSLQENEGQ
ENGDKASVESKGLVATLQMKVSDILKQILQPTDVTLLSEIDLQGVSWHQGKHIIAFISGA
NQVTIRDYDDKDEKEPCVLTSDSQRSVKALEWRPNGGKSLSISCRGGICIWAASYPGNMA
LVRSGGSALRGSLSRGSGTRWILVDFLRCQNDEQISALSWSPCGRYLASASYDSSSFTIW
DVSQGAGTPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSV
TGAIWDPEGRFILISFSKSSTLGSVHFSSKPPSLDAHLLPVELPEIASLTGSEGIEKIAW
DASGERLAVSYKGGDENYKGLIAIYDTRRTPIVSASLVGFIRGPGENPKALSFSFHDKFK
QGPLLSVCWSTGFCCTYPLIFRSHVLP
NT seq 1344 nt   +upstreamnt  +downstreamnt
atggcatcttttcctcatcccggttccgtcaccgtctgcgagatcaacagagacttgatt
acggctcagaacttgtctgatgagcgagctctggagacatatggaaaagttcttggaatg
gtgtttagccctgtttcgttcgactctacacctagttctcttcaggaaaatgaaggacaa
gagaatggagataaggcaagtgttgagagtaaaggactggtggcaacacttcagatgaag
gtttcagacattcttaaacagattttacaacccaccgatgtaactctcctctcagagatt
gatcttcaaggagtgagttggcatcaagggaagcatattattgcctttatatctggtgca
aatcaagttacaattcgtgattatgacgacaaagatgagaaggaaccttgcgttttgaca
agtgattcacagagaagtgttaaagcccttgagtggagaccaaatggtggaaaatcccta
tccatatcctgtcggggaggaatatgcatatgggctgcttcctatccaggtaacatggca
ttggttagatccggtggttccgcgttgaggggaagtctctctcgaggatccggaactcgc
tggattttggttgactttcttcggtgtcaaaatgatgagcaaattagtgctctctcatgg
agcccctgtggaagatatttagcatcagcctcatatgacagctcatctttcaccatatgg
gatgtttctcaaggggcggggacacctattagacggggactaggtggaatatcaatgctt
aaatggtcacctacaggagactacttctttgcagcaagatttgatgggactttttgtctt
tgggaaacaaacacatggacatctgagccctggtctttgtctagtggatctggatctgtc
acgggagcgatatgggatcccgaaggacggtttatcttgatttcgttttcgaaatcttca
acactgggttctgttcatttctcatccaagccaccatccttggatgcccatctattacca
gttgaattgccagagattgcttctcttactggcagtgagggcatcgagaagatagcatgg
gatgcatctggagaacgattggctgtgtcatacaaaggaggcgatgaaaattacaaagga
ttgattgccatctacgacacacgaaggacacctattgtatcagcatcactagtcggtttc
atcagaggacctggagaaaacccaaaagctctctccttttcattccatgacaagttcaag
caaggtccactcctttccgtgtgttggagcaccggattctgttgcacctatcctctcatt
ttccgctcacatgttcttccttaa

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