Arabidopsis lyrata (lyrate rockcress): 9314186
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Entry
9314186 CDS
T01578
Name
(RefSeq) aladin
KO
K14320
aladin
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
9314186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9314186
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
9314186
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_WDHD1_1st
ANAPC4_WD40
WD40
WD40_CDC20-Fz
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_CAF1B_HIR1
WD40_Prp19
Beta-prop_EML_2
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
9314186
NCBI-ProteinID:
XP_020880747
LinkDB
All DBs
Position
Unknown
AA seq
447 aa
AA seq
DB search
MASFPHPGSVTVCEINRDLITAQNLSDERALETYGKVLGMVFSPVSFDSTPSSLQENEGQ
ENGDKASVESKGLVATLQMKVSDILKQILQPTDVTLLSEIDLQGVSWHQGKHIIAFISGA
NQVTIRDYDDKDEKEPCVLTSDSQRSVKALEWRPNGGKSLSISCRGGICIWAASYPGNMA
LVRSGGSALRGSLSRGSGTRWILVDFLRCQNDEQISALSWSPCGRYLASASYDSSSFTIW
DVSQGAGTPIRRGLGGISMLKWSPTGDYFFAARFDGTFCLWETNTWTSEPWSLSSGSGSV
TGAIWDPEGRFILISFSKSSTLGSVHFSSKPPSLDAHLLPVELPEIASLTGSEGIEKIAW
DASGERLAVSYKGGDENYKGLIAIYDTRRTPIVSASLVGFIRGPGENPKALSFSFHDKFK
QGPLLSVCWSTGFCCTYPLIFRSHVLP
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atggcatcttttcctcatcccggttccgtcaccgtctgcgagatcaacagagacttgatt
acggctcagaacttgtctgatgagcgagctctggagacatatggaaaagttcttggaatg
gtgtttagccctgtttcgttcgactctacacctagttctcttcaggaaaatgaaggacaa
gagaatggagataaggcaagtgttgagagtaaaggactggtggcaacacttcagatgaag
gtttcagacattcttaaacagattttacaacccaccgatgtaactctcctctcagagatt
gatcttcaaggagtgagttggcatcaagggaagcatattattgcctttatatctggtgca
aatcaagttacaattcgtgattatgacgacaaagatgagaaggaaccttgcgttttgaca
agtgattcacagagaagtgttaaagcccttgagtggagaccaaatggtggaaaatcccta
tccatatcctgtcggggaggaatatgcatatgggctgcttcctatccaggtaacatggca
ttggttagatccggtggttccgcgttgaggggaagtctctctcgaggatccggaactcgc
tggattttggttgactttcttcggtgtcaaaatgatgagcaaattagtgctctctcatgg
agcccctgtggaagatatttagcatcagcctcatatgacagctcatctttcaccatatgg
gatgtttctcaaggggcggggacacctattagacggggactaggtggaatatcaatgctt
aaatggtcacctacaggagactacttctttgcagcaagatttgatgggactttttgtctt
tgggaaacaaacacatggacatctgagccctggtctttgtctagtggatctggatctgtc
acgggagcgatatgggatcccgaaggacggtttatcttgatttcgttttcgaaatcttca
acactgggttctgttcatttctcatccaagccaccatccttggatgcccatctattacca
gttgaattgccagagattgcttctcttactggcagtgagggcatcgagaagatagcatgg
gatgcatctggagaacgattggctgtgtcatacaaaggaggcgatgaaaattacaaagga
ttgattgccatctacgacacacgaaggacacctattgtatcagcatcactagtcggtttc
atcagaggacctggagaaaacccaaaagctctctccttttcattccatgacaagttcaag
caaggtccactcctttccgtgtgttggagcaccggattctgttgcacctatcctctcatt
ttccgctcacatgttcttccttaa
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