Arabidopsis lyrata (lyrate rockcress): 9314441
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Entry
9314441 CDS
T01578
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 12
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9314441
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9314441
03036 Chromosome and associated proteins [BR:
aly03036
]
9314441
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
9314441
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
9314441
mRNA degradation factors
5'-3' decay
Decapping complex
9314441
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Gene silencing
piRNA pathway
9314441
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Motif
Other DBs
NCBI-GeneID:
9314441
NCBI-ProteinID:
XP_020881562
LinkDB
All DBs
Position
Unknown
AA seq
494 aa
AA seq
DB search
MNNRGRYPPGVGTGRGAPPNPDYQSYRQQQPQDQQYVQRGYSQNPQQMQLQQQHHQQQQQ
QQWSRRSQLPGNASNANEVQKTSQPEASSDANGQDWKATLRLPPPDTRYQTADVTATKGN
EFEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLE
KIDPSNNVIQAMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVH
LLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFS
ATFPVTVKAFKDRHLRKPYVINLMDQLTLMGVTQYYAFVEERQKVHCLNTLFSKLQINQS
IIFCNSVNRVELLAKKITELGYSCFYIHAKMVQDHRNRVFHEFRNGACRNLVCTDLFTRG
IDIQAVNVVINFDFPRTSESYLHRVGRSGRFGHLGLAVNLVTYEDRFKMYQTEQELGTEI
KPIPSNIDQAIYCQ
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgaataacagaggaagatatccaccgggtgttggaaccggacgtggtgcgccgcccaat
ccagattatcagtcttatcgtcagcaacaacctcaagatcagcagtatgttcaacgcggt
tattcgcagaaccctcagcagatgcaactgcagcaacaacatcatcaacagcaacagcag
caacagtggtcaagacgctctcagcttcctggaaacgctagtaacgctaacgaggttcaa
aagacgtctcagcccgaagctagcagcgatgctaatggtcaagactggaaggcaacgtta
aggctcccacctcctgatactcgttatcagacagcggatgtgacagctacgaaaggaaat
gaattcgaagattactttctcaaaagagatctgttaaagggaatatatgagaagggtttt
gagaagccatctccaattcaagaagagagcattccaattgctttaactggtagtgatatt
cttgctagagccaaaaacggtacaggaaagactggtgccttctgcattccagtcctcgag
aaaattgatccatctaacaacgttattcaagccatgattctagttccaacacgagagctg
gcccttcagacatcacaagtttgcaaggagctttccaaatatctgaatatccaggttatg
gttaccactggcggtaccagtctgagagatgatattatgcgattacatcaacctgtgcat
ctactggttggaactcctggaagaatattggatcttacaaaaaagggtgtctgtgttttg
aaagactgtgcgatgcttgtaatggatgaggccgacaagcttctatctgcggaattccaa
ccttctcttgaggaattgatacagtttctgccccaaaatcgtcaatttttgatgttttct
gctacattccctgtcactgtgaaggcttttaaggatcgacatctccggaagccctacgtt
atcaatctcatggatcaactcacgcttatgggtgtcacgcaatattatgcttttgttgaa
gaaaggcagaaggttcactgcctcaacacacttttctctaagctgcaaataaatcaatcg
ataatcttttgcaactctgtcaatcgcgtggagctgttggctaagaaaatcacagaactt
ggttattcatgcttctacattcatgcgaagatggttcaagaccataggaacagagtattc
cacgagttccgcaatggtgcctgcaggaatctcgtttgcactgatctgtttactcgagga
attgacattcaagctgtgaatgtagtgatcaacttcgattttcctaggacttctgagtca
tatctacacagggtgggccgatcaggacggtttggacaccttgggttggctgtgaatttg
gtaacatacgaggaccgtttcaaaatgtatcagactgagcaagaacttgggactgaaatc
aaaccaattccgtctaatatcgatcaagcaatctactgtcagtaa
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integrated database retrieval system
