Arabidopsis lyrata (lyrate rockcress): 9314449
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Entry
9314449 CDS
T01578
Name
(RefSeq) probable RNA polymerase II transcription factor B subunit 1-3 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03022
Basal transcription factors
aly03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
9314449
09124 Replication and repair
03420 Nucleotide excision repair
9314449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9314449
03400 DNA repair and recombination proteins [BR:
aly03400
]
9314449
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
9314449
DNA repair and recombination proteins [BR:
aly03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
9314449
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BSD
PH_TFIIH
CENP-Q
DUF6832
Motif
Other DBs
NCBI-GeneID:
9314449
NCBI-ProteinID:
XP_020881559
LinkDB
All DBs
Position
Unknown
AA seq
569 aa
AA seq
DB search
MSMEKRVKYKSSVKDRGTLGSLKISEVMLLFVPNDPKSDLKLKVQTHNIKSQKYTKQGSN
KPPWLNLTNKQGRSHIFEFENYPDMHACRDFITKALAKCDEESNKSVVSTPSEQLSMAEF
ELRFKLLRENSELQKLHKQFVESKVLTEDEFWSTRKKLLGKYSIRKSKQQMGLKSMMVSG
IKPSSDGRTNRVTFTLTSEIIFQIFAEKPAVRQAFIDYVPKKMTEKDFWTKYFRAEYLYS
TKNTAEAAEDEELAVFLKPDEILAREARQKMRRVDPTLDMDADQGDDYTHLMDHGIQRDG
TNDAVEPQNDQHRRSLLQDLNRHAAVVLEGRCIDVESEETRIVAEALTRAKQVSKANQER
LERMSRAAEMEDLQAPQNFPLAPLSIKDPRDYFESQQGNVLSEPRGARASKRNVYEAYGL
LKESILEIRMTGLSDPLVKPEVSFEVFSSLTRTISTAKNIIGKNPRESFLDRLPKSTKDE
VIHHWTSIQELLRHFWSSYPITTTYLNTKVAKLKDAMSNTYSLLDAMKQSVQSDLRHQVS
LLVRSMQQALDAAFQHYESDLQRRTAKIA
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatggagaagcgagtcaaatacaagagctctgtgaaggatcgaggaacgcttgga
tccctcaaaataagtgaagtgatgttgctttttgtcccaaatgatcctaaatcagatttg
aagcttaaagttcagactcacaacatcaaaagtcagaaatataccaaacaaggatcaaat
aaacctccttggctcaatctgaccaataagcagggaaggagtcatatctttgagtttgaa
aattatcccgacatgcatgcttgtcgagatttcatcactaaggcccttgctaaatgtgat
gaggagtctaataaatcagttgtctctacaccttctgagcaacttagtatggcagaattt
gagctacgcttcaagcttcttcgagaaaatagtgagttgcagaaattgcataagcaattt
gtggaaagtaaagtcctgacggaagacgaattctggtctacaaggaagaaattacttggt
aaatattccattagaaagtcaaaacaacagatggggcttaaaagcatgatggtttcaggc
atcaaaccatcttctgatgggcggactaatcgggtgacgtttaccttaacgtctgagata
atttttcagatttttgctgagaagccggctgttcggcaggcattcatagattatgttccg
aaaaagatgacagaaaaggacttctggacaaaatattttagagcagaatatctttacagc
acaaaaaatacagcagaagctgctgaggatgaggaactcgctgtctttctgaagcctgac
gagatattggctcgggaagctcgtcaaaagatgagacgggttgatccaactcttgacatg
gacgctgaccagggagatgactacactcatcttatggaccatgggatccagcgcgatggc
accaatgacgctgttgaaccacagaatgaccagcataggaggtcacttttacaagatctt
aatcgccatgctgctgttgtattggaaggaagatgcatcgatgttgagtcagaagagacg
aggattgttgcagaggctctcacacgggcgaaacaagtaagcaaagctaaccaggagagg
ttggagagaatgtcccgtgcagcagagatggaggatcttcaagcaccacaaaacttccca
ctagcccccctctctatcaaggaccctcgtgattactttgaatctcaacaaggaaacgtc
ctcagtgaacccagaggagcaagggcatcaaagagaaatgtatatgaagcttatggatta
ctaaaagaatccattttggagattagaatgacgggattaagtgatccgttggttaaacct
gaagtttcctttgaggttttcagttcgttgacccgaactatctcaactgccaaaaatatt
atcgggaagaacccacgggagagctttctggacagattaccaaagtccactaaggatgaa
gttatacatcactggacatcaatacaggaattactgagacatttttggtcatcttacccg
ataacaacaacatatcttaataccaaggttgctaaactgaaggatgcaatgtccaatact
tattcactactcgatgcaatgaaacagtcggtgcagtctgatctccggcatcaggtttcg
ttactagttcgttcaatgcaacaggctcttgatgctgcgttccaacactacgaatcggac
ttgcagagaagaaccgctaagattgcataa
DBGET
integrated database retrieval system
