Arabidopsis lyrata (lyrate rockcress): 9314452
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Entry
9314452 CDS
T01578
Name
(RefSeq) RAB6A-GEF complex partner protein 1
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aly04131
]
9314452
Membrane trafficking [BR:
aly04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
9314452
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RIC1_2nd
RIC1
Beta-prop_THOC3
Beta-prop_EML_2
Beta-prop_IFT122_1st
WD40_CDC20-Fz
ANAPC4_WD40
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
WD40_WDHD1_1st
Beta-prop_VPS8
WDR55
Beta-prop_WDR19_1st
Beta-prop_WDR3_2nd
Beta-prop_NOL10_N
Beta-prop_IFT140_1st
Beta-prop_WDR3_1st
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Motif
Other DBs
NCBI-GeneID:
9314452
NCBI-ProteinID:
XP_020880139
LinkDB
All DBs
Position
Unknown
AA seq
1127 aa
AA seq
DB search
MYMAYGWPQVIPLLEGSCPSSQRVVYLKLAGRLLLVVSPSHLELWGSSQQRVRLGKYMRD
DRSVREEGENLQAVWSPDSKLIALLTSSFFLHIYKIKFTDKRVKPGERQPSELSFATISL
LLSEQVPFAGKDLSVSNFVRDSKTMLLGLSDGCLYSISWKGEFGGAFSIGSHPSDSNDDR
LLSYSLGNGLVSGVASAALASDDEFSTKSAIVQLELCTRSKLLFVLNSDGQLVVCSVNKK
GLKYTESIKAEKKLGGDAVCASVASEQQILAVGTRKGMVELYDLSQSISLLRTVSLHDWG
YSADYTGPVNNIAWTPDNSAFAVGWKSRGLAVWSVSGCRLMSTVRQIGLSSTSSPKINPK
QDSKYEPLMNGTSAIQWDEYGYRLFATEEASSDRILAFSFGKCCLNRGVSGKTYVRQVMY
GDDRLLMVQAEDTDELKLLHLKLPVSYITQNWPVQHVAASEDGKYLAVAGLHGLILYDVR
FKKWRVFGDVSQEQQIHCKGLLWLGKIVVICNYIEASETYELLFYPRYHLDQSSLLCRKV
LLGKPMVMDVYQDYILVSYLPFVIHVYHVKIYGELTPSSKVDLQLSTVRELSIMTAKSHP
AAMRFVPDQHPREGELDNDNLSSDLSDREPSRCLILRGNGELSLLDLVDGRERELTDSVE
LFWVTCGQSEEKTNLVEEVSWLDYGHRGMQVWYPSLGDDPFMQEDFLQLDPELEFDREVY
PLGLLPNVGVVVGVSQRMSFSASAEFPCFEPTPQAQTILHCLLRHLLQRDKNEEALLLAQ
LSAEKPHFSHCLEWLLFTVFDAEISRPNPNRNQISGPGYIKKLSLLKKACDLIKNFPEYY
DVVVNVARKTDARHWADLFSAAGISTTLFEDCFQRRWYRTAACYILVIAKLEGVAVSQYC
ALRLLQATLDESLYDLAGELVRFLLRSGRDVEQAPTESDSLSPKLLGFLIFGSSHKKSSL
DKSSSFKEQSPHVASVKSILESHASYLMSGKELSKLVAFVKGTQFDIVDFLQRERYGCAQ
LQNFAAGLELIGQKLQMSELQNRLDAEFLLAQMCSVKFKEWIVVLATLLQRSEVLYDIFR
YDLRLWKAYSMTLESHLAFAQYHDLLQILEEKLSATSREESNRGSIS
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atgtatatggcttacggatggccgcaggtgatcccgcttctagaaggatcgtgtccgtct
tctcagcgagtcgtgtaccttaagctcgccggccggctattgctggttgtttctccgtct
cacttggagctttggggttcttctcagcaacgagtgaggttgggaaagtatatgagagat
gacaggtcggtgcgagaagaaggagagaatttgcaagctgtgtggagtccagactccaaa
ttgattgctcttcttacatcatcattcttccttcatatatataaaattaagtttactgat
aaacgagtaaaacccggagagagacaaccctcggagttgtcttttgcgaccatatctctt
ttgctaagtgagcaggtcccttttgctgggaaggacttgtctgtgagcaattttgtgagg
gacagcaaaactatgcttttgggactttctgatggatgtttatatagtatttcctggaaa
ggagagtttggtggagctttcagtattggctcccacccttctgatagcaacgatgataga
ctcttgtcctactctcttggtaatgggctagtctctggagtagcttcagcagcacttgca
tctgatgatgaattctcaacaaaatcggctattgttcagctggaactctgcactcgctcg
aagttattgtttgtgttaaattctgatgggcagctagtagtatgctctgtgaataagaaa
ggtttaaagtacactgagagcattaaagctgagaagaagttgggtggtgatgctgtttgt
gcatcagtggcttcagagcaacaaattcttgctgtgggtacaagaaaagggatggtggaa
ttatacgatctgtcacaatcgatctctctcttacgaacagtttctttgcatgactggggt
tattcagccgattacactgggcctgtcaataacattgcatggacgcctgataattctgct
tttgcagttgggtggaagtcgagaggacttgcagtttggtctgtttctggatgtcgattg
atgtcaactgtccgccaaattggattgagttctacatcttcccctaaaattaatccaaaa
caagacagtaaatacgaaccactgatgaatggtacttcagccatccagtgggatgaatat
ggatatagactatttgctacagaggaggcatcaagtgatagaattcttgcattttctttt
gggaaatgttgcttaaatagaggagtttcaggaaaaacttatgttcgtcaggtaatgtat
ggtgatgatagactactcatggttcaggcggaggacactgacgagcttaagcttttacat
ctaaaacttccagtttcttatattacccaaaattggcctgttcaacatgtggcagctagc
gaggatggaaaatacttggcggttgctggtttacatggcctgattttgtatgacgttagg
tttaagaagtggagggtatttggagatgtcagtcaagaacaacagattcattgcaagggt
ttgttatggttggggaagatagtcgtaatctgtaactacatcgaagcttctgagacatat
gaactgcttttctatccaagatatcaccttgatcagagctctttactttgtcgtaaagtg
ctgcttggcaaaccaatggtgatggatgtgtaccaggattatatacttgtatcttatctt
ccgtttgtcatccacgtctaccatgtgaagatatatggcgaattgacaccttcaagcaaa
gtagatctacagctttccacagtaagagagttgtccatcatgactgcaaagagccatcca
gcagcaatgcgatttgttcctgaccagcacccgagagaaggcgagttggataatgataat
ttgtcttctgatttgtcagacagggaaccctcaagatgtcttatactgaggggaaacggg
gagctttcacttcttgatttggttgatggacgagagagggaacttacagactcagttgaa
ctattttgggtgacatgtggtcaatcggaggagaagacaaatcttgtcgaggaagtatct
tggctagattatggacaccgaggaatgcaggtttggtatccttctctaggggatgatcct
tttatgcaagaggatttcctgcagttggatccagagttggaatttgatcgtgaggtgtat
cccttgggacttttaccaaacgtgggtgtcgttgtcggagtttctcaaagaatgtcattt
tcggctagcgcagagtttccctgttttgagcctacaccccaggctcagactatactacat
tgcctgctccgccacctccttcagagagataaaaatgaagaggcgttactcttagcacaa
ttatcggcagagaaacctcacttctcccattgtctggagtggcttcttttcactgttttt
gatgcagagatttctaggccaaatccaaacaggaaccagatttcaggacctggatatatt
aaaaagttatcccttttgaaaaaagcctgtgatttaataaaaaatttccctgagtactat
gatgtggttgtgaatgtagccagaaaaaccgatgcccgtcactgggctgatttattttct
gctgctgggatatcaacaacgttgtttgaggactgcttccagcgaagatggtatcgaacc
gcagcttgctatatacttgtgattgccaaactagaaggtgttgctgtcagtcagtactgt
gcattacggctattgcaggcgacacttgatgagtccctctatgatcttgctggagaacta
gtgaggttcttactaagatctggaagagacgtcgagcaggcgccaacagaatcagattca
ttgtcacctaagcttctcgggtttcttattttcggttccagccataagaaatcatcactt
gataagagctcctcattcaaagagcaaagtcctcatgttgcttctgtaaagagcatactt
gaaagtcatgccagttacttgatgtctggtaaagaactttcaaagcttgttgcattcgtc
aaaggcacccagtttgatatcgtggattttcttcaacgagaaagatatggttgtgcgcag
ctgcagaatttcgctgcaggacttgaactgattgggcaaaagctgcaaatgagtgagcta
cagaacaggttagatgcagagtttctattggctcagatgtgttctgtcaaattcaaagaa
tggatagttgttcttgccactcttttacaacggtccgaggttctttatgatattttccgg
tatgatctacggttgtggaaagcatatagcatgacattagagtctcacttggctttcgcg
cagtaccatgacttgcttcagattttagaggaaaaactctcagcgacctcacgagaagaa
agcaatagaggttccatctcttga
DBGET
integrated database retrieval system
