KEGG   Arabidopsis lyrata (lyrate rockcress): 9314618
Entry
9314618           CDS       T01578                                 
Name
(RefSeq) LOW QUALITY PROTEIN: coatomer subunit alpha-2
  KO
K05236  coatomer subunit alpha
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:aly00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:aly04131]
    9314618
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:aly04147]
    9314618
Membrane trafficking [BR:aly04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    9314618
Exosome [BR:aly04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   9314618
  Exosomal proteins of bladder cancer cells
   9314618
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 Beta-prop_WDR3_2nd WD40_WDHD1_1st WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_1st WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_EML Beta-prop_TEP1_C TPR_COPA_B Beta-prop_WDR75_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_2nd ANAPC4_WD40 WD40_RFWD3 Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_WDR41 Beta-prop_Aladin NBCH_WD40 Beta-prop_SPT8 Beta-prop_IFT140_1st PEP5_VPS11_N Beta-prop_RIG_2nd Beta-prop_IP5PC_F Beta-prop_WDR19_1st DUF6956
Other DBs
NCBI-GeneID: 9314618
NCBI-ProteinID: XP_020884273
LinkDB
Position
Unknown
AA seq 1199 aa
MLTKFKTKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRVGTLIDKFDGHQGPVRGVHFH
TSQPLFVSGGDDCKIKVWNYKTHWCLFTLLGHLDYIRTVQFHHEYPWILSASDDQTIRIW
NWQSRTCVSVLAAHNHYVMCASFHPKDDLVVSASLDQTVRVWEIGALKKKTVSPSDDIMR
LAEINSDLFDSVDVTVKYVLEGHERGVIWAAFHPNLPLIVSGSDDRQVKLWRMNETKAWE
VDTLRGHMNNVSSVMFHAKQDIIVSNSEDNSIRVWDATKRTEIQTFRREHDRFWSLAVHP
EINLLAAGHDNGMIVFKLERERPAFALSGDSLFYAKDRFLRCYEYSTQKDSQVIPIRSPG
TPSLNQSPRTLSYSPTENAVLIFSDLDGGSYELYIIPKDRSDVVQDEMRGKGGSAVFIAR
NRFAVLEKSTSQVLVKNLKNEVVEKSSLPIPADAIFYAGTGNLLCRSEDKVVIFDLQQRL
VLGELQIPFLRYVVWSNDMESVALLGKHYIIIASKKLAFQCMLHERIRVKSGAWDDNGVF
IYTTLNHIKYCLPNGDSGIIKTLDVPIYITKVSGNTIFCLDRDRKNRAITINATEYIFKL
ALLRKRYDHVMSMIKNSQLCGQAMIAYLQQKGFPEVALHFVEDERIRFNLALESGNISVA
VASATEINEKDHWYRLGVEALRQGNSRIVEFAYQQTKNFERLSFLYLITGNLDKLSKLMK
IAEVKNNVXVKILDNAGHLPLAYITASVHGLNDVAERLAIELGDNVPSLPEGKTPSLLMP
PPPIMCGGDWPLLRVMKGIFEGGLESANRGGAVDEEEEDVEGDWGEGLDMVNIDGMENTE
IEAILDDEEDNDGVCEWGGIGDLDLPTELDSLKVSVSACSSVFITPTQGMPVSQIWSEKS
SLAAEQAAAGSFDTAMRLLHRQLGIKNFAPLKSKFLDLFSGSHSYLRAFSSSPVVPLAIE
RGWSESSSPNVRGPPALVFDFSQLEAKLKSGYKATTAGKLSEALRVFLSILQTIPLVVVE
SRREVDDVKELVIIVKEYVLGLQMELKRREMKDDPVRQQELAAYFTHCKLQTPHLRLAYF
SAMTVCYKAKNMATAAHFARSLLDTNPTIESQARTARQVMQAADRNMTDATALNYDFRNP
FVICGSTYVPIYKGQKDVACPYCTARFVPSQEGNICTVCDLAVIGADASGLLCSPSQVL
NT seq 3600 nt   +upstreamnt  +downstreamnt
atgttgaccaagttcaagaccaagagtaacagagttaaaggtctgagctttcaccctaaa
agaccatggattctcgccagtttacacagtggtgtgatccagctctgggattaccgtgtg
ggtaccttgatcgataagtttgacgggcaccaaggacctgttcgtggtgttcattttcac
acttcacagcctctattcgtctctggaggggatgattgcaagataaaagtttggaactac
aaaacacactggtgtcttttcactcttcttggacatcttgattatatccgcacggttcag
tttcatcacgaatacccatggattctgagtgccagtgacgaccaaactatccgtatatgg
aactggcaatcacggacttgtgtctctgtcttggctgctcacaatcattatgttatgtgt
gcttctttccacccaaaagatgaccttgttgtatcagcttccttagatcagactgttcgt
gtttgggaaattggtgctcttaagaagaagactgtatctccttctgatgatatcatgagg
ttggctgagataaatagtgatctttttgatagtgttgatgtcacagtcaaatacgtcctt
gaaggtcatgaaagaggtgtaatttgggctgcttttcatcccaacctgcctcttatcgtc
tcgggttcagatgaccgccaagtaaagctgtggcgtatgaatgaaactaaagcttgggag
gtggatacattgcgaggtcacatgaataatgtttcatccgttatgttccatgcaaaacaa
gacataattgtatcaaactctgaggataacagcatccgtgtctgggatgctaccaagcga
actgaaatccaaacttttcgccgtgaacatgatcgattctggagtcttgcagttcaccct
gagattaatctactagcagcaggacatgacaatggtatgattgtcttcaaacttgagaga
gaacgtcctgcatttgctttgagtggtgattcattattctatgccaaggatagattttta
cggtgctatgaatattcaactcaaaaagattcccaagttattcctatacggagtcctggt
accccaagcttgaatcaaagtcctaggactttatcgtacagtccgacagaaaatgcagtt
ctgatcttctcagatctggatggtggttcttacgagttgtacatcataccaaaagacaga
agcgacgttgtgcaagatgaaatgcgggggaaaggtggttctgcggtgttcattgctcga
aatcggtttgctgttctggagaaaagcaccagccaggtgctagtgaagaatctaaagaat
gaggtggttgaaaagagttctctgcctattcccgcagacgctatcttttatgctgggact
ggaaatttgctttgtaggtctgaggataaagtggttatatttgaccttcaacaaaggctt
gttcttggtgagcttcagataccgtttcttaggtacgttgtttggtctaacgatatggag
agtgttgctttgctcggcaaacattatatcattattgcgagcaaaaaacttgctttccag
tgcatgcttcatgagagaatacgtgtgaaaagtggagcatgggacgacaatggtgtcttc
atttacactactctgaaccacatcaagtattgtcttcctaatggagatagtggaatcatc
aaaaccctggatgtcccaatctacatcaccaaggtgtctggaaatacaatcttttgcttg
gaccgggataggaaaaacagggctatcaccattaatgcaacggaatacattttcaagctt
gcactgctgagaaagagatatgatcatgtcatgagcatgataaagaactcccagctatgt
ggacaggctatgatcgcttatcttcagcagaaaggctttcctgaagttgccctccacttt
gttgaagacgagaggatccgattcaacttggctcttgaaagtggcaacatcagtgtagct
gttgcatccgctacagagattaatgagaaagaccactggtatagactcggagtggaggct
cttcgtcaaggaaattctagaattgttgagtttgcgtaccagcagacaaagaactttgag
aggttatcttttctatatctcattactggcaatttagacaagctgtcaaagttgatgaaa
attgcagaggtgaagaacaatgtangtgttaagatactagataatgctggtcatttgcct
ctagcttatatcacagcttcggttcatggtttaaatgacgtcgctgagcgactggccatt
gagttaggagacaacgtgccctcattgcctgaagggaaaactccatcgcttctaatgcca
ccgcctcccatcatgtgtggtggcgattggcctcttctgagagtgatgaaaggaatattt
gaaggagggcttgagagtgcaaaccgaggaggggctgttgatgaagaagaagaagatgtt
gaaggcgactggggtgagggacttgacatggtaaatattgatggaatggagaacacagaa
atcgaagccattttggacgatgaagaagataacgacggggtttgtgaatggggaggaatc
ggagacttggatcttccaacagagttagactctctgaaagtctctgttagcgcatgttca
tcggtttttattacccctacacaaggcatgcccgtaagtcagatttggagcgagaaatct
tcccttgctgctgagcaggctgcagcaggaagctttgacactgcaatgcgtttgctccac
agacagcttggcataaagaactttgcgcctttaaaatcgaagtttcttgatctgttcagt
gggagccatagctatctgcgtgccttttcttcatctcctgtggttcctcttgccattgag
cgtggatggagtgagtcttccagtcctaacgtccgtggcccgccagctcttgttttcgat
ttctctcagctagaagcgaagctcaaatccggctacaaagccacaacagctgggaaatta
tctgaggctctccgtgtcttcctttctattctccaaaccatcccattggtggtagttgag
tcaagaagagaagtcgatgatgttaaggaactggtcatcatagtcaaagaatatgtcctc
ggtcttcaaatggagctcaagaggagagagatgaaagatgatccggtgaggcagcaagag
cttgctgcttacttcactcactgtaaactccaaacacctcacctacggctcgcgtacttt
agtgcaatgaccgtctgctacaaggcaaagaacatggctactgctgcccacttcgccaga
agtttgttggatacaaaccctactattgagagccaggccaggacggctagacaagttatg
caagctgctgaccgcaacatgacagatgcaaccgcgctcaactacgactttagaaacccg
tttgtgatatgcgggtccacttacgtgccaatctacaaaggacagaaagatgtggcatgt
ccttattgcactgcccggtttgtaccaagccaggaaggaaacatttgcacagtctgcgat
cttgcagtcattggtgcagatgcttctggtttgctatgctctccgtctcaagtcctatga

DBGET integrated database retrieval system