Arabidopsis lyrata (lyrate rockcress): 9314693
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Entry
9314693 CDS
T01578
Name
(RefSeq) rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
9314693
Enzymes [BR:
aly01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
9314693
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
Motif
Other DBs
NCBI-GeneID:
9314693
NCBI-ProteinID:
XP_020884240
LinkDB
All DBs
Position
Unknown
AA seq
681 aa
AA seq
DB search
MKVGAPANKPGRIIVQVLLLHLLLLLLLLQSVHSQRSQNKLNITKPGQNIPALTVQLRRV
GHDDTVVIDNGIVQVTFSSPQGLITGIKYHGIDNVLDDEIEDRGYWDVVWYEPGKKSETD
KLEGTKFEIITQNEEQIEISFTRTWTISKRGSLVPLNVDKRYIIRSGVSGIYMYGILERL
GGWPDVDMDQIRIVFKLNPKKFDFMAISDDRQRSMPSMADRDNSKTLAYKEAVLLTNPSN
PMLKGEVDDKYMYSMEDKDNNVHGWITSDPPVGFWMITPSDEFRLGGPIKQDLTSHAGPI
TLSMFTSTHYAGKEMRMDYRNGEPWKKVFGPVLVYLNSVSPKESTLRLWRDAKRQMAAEV
KSWPYDFVTSEDYPLRHQRGTIEGQFLIKDSYVSRLKIYGKFAFVGLAPIGEAGSWQTES
KGYQFWTKADRKGRFIIENVRAGNYSLYAWGIGFIGDYKYEQNIIITPGSEMNVGPIVYE
PPRNGPTLWEIGVPDRTAGEFYIPDPYPTLMNKLYVNPLQDRFRQYGLWDRYADLYPQND
LVYTIGVSDYRRDWFFAHVTRNFGNDTYQPTTWQIIFNLKNVNRIGLYTLRLALASAASS
ELQIRINDPKSGHIFTTGLIGKDNAIARHGIHGLYRLYSIDIAGNLLSVGDNTIYLTQTR
SIGMFQGVMYDYIRLESPFRT
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttggagctccggcgaataagccgggtcggatcattgtgcaagttcttcttcta
catcttcttcttcttcttcttcttcttcaaagtgttcattctcagagatcacaaaacaaa
cttaacatcacaaagcctggacaaaacataccagccttaacagttcagctaaggagagtt
ggtcatgatgacacggtggtaattgataatggtattgttcaagttactttctcgagccca
caaggcttaattactgggataaaataccatggtatcgacaatgtgttggacgacgaaatt
gaggatcgtgggtattgggacgtagtctggtatgaaccgggaaagaaatcggagactgac
aaattagaaggaactaaatttgaaatcataacacagaacgaagaacaaattgaaatttca
tttacaagaacgtggaccatctccaaacgaggctccttggtccccctaaacgtagataaa
agatatattattcgaagtggtgtctccggaatatacatgtacggtatattggagaggtta
ggaggttggcccgacgtggacatggaccaaatcaggattgtcttcaagctcaacccgaaa
aaatttgattttatggcgatatccgatgatcgacagagaagcatgccatcgatggcggat
cgagacaattctaagacattagcttacaaagaagctgttcttttgacaaatccaagcaac
cctatgctcaaaggagaggtggatgataagtatatgtactcaatggaagacaaagacaac
aatgtgcatggttggatcacatcggacccaccggttgggttttggatgataactccgagc
gatgagttccgtcttggtggccccatcaagcaagacctcacctctcatgctggacccatc
acactttccatgtttacgagcacgcattatgcgggaaaagagatgagaatggattataga
aatggagagccatggaagaaagtttttggtcctgtcttggtttatctcaactctgtctct
cccaaagaatccactcttcgtctctggagagatgctaaacgacagatggctgcagaagtc
aaaagctggccttatgattttgtaacttcagaagattatcctcttcgtcatcaaagagga
actatcgaaggtcaattcttaatcaaagacagttacgtgtcaaggttaaagatatatgga
aaatttgcgtttgttggtttggcaccaattggtgaagccggttcatggcaaaccgaatcc
aaggggtatcaattttggacgaaagctgacagaaaagggagattcataatagagaatgtg
agggcaggcaattatagtctctacgcatggggtattggttttattggagactataagtat
gagcaaaacattatcatcacgccaggtagcgagatgaatgtagggcctatagtgtatgaa
ccgccgagaaacggtccaacattgtgggaaatcggtgtaccggatcgaaccgcgggtgaa
ttctatataccggatccttatcctacactgatgaataagctttatgttaacccacttcaa
gacagatttaggcaatatggattatgggatcgttacgcagatttataccctcaaaacgat
cttgtctacacaatcggtgtaagtgattatagaagagattggttctttgcacatgtcacg
agaaactttggtaacgatacataccaaccaacgacatggcaaatcatattcaacctaaaa
aacgtgaaccggatcggactctacacactccgactagctctagcatcagccgctagttcc
gaactacaaattcgaatcaacgatccgaaatccggtcatattttcacaaccggtttgatc
ggaaaggacaatgcgatcgcgagacatggaattcatgggttatatagattgtatagtatc
gacattgctggaaatctactaagtgttggtgataatacaatatatttaactcaaacgaga
agtataggaatgtttcaaggtgttatgtatgattatattcgtcttgaaagtccttttaga
acttga
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