KEGG   Arabidopsis lyrata (lyrate rockcress): 9315111
Entry
9315111           CDS       T01578                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit B isoform X1
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03030  DNA replication
aly03410  Base excision repair
aly03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    9315111
   03410 Base excision repair
    9315111
   03420 Nucleotide excision repair
    9315111
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aly03032]
    9315111
   03400 DNA repair and recombination proteins [BR:aly03400]
    9315111
Enzymes [BR:aly01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     9315111
DNA replication proteins [BR:aly03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    9315111
DNA repair and recombination proteins [BR:aly03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      9315111
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2 zf-DNA_Pol zf-CW
Other DBs
NCBI-GeneID: 9315111
NCBI-ProteinID: XP_020883509
LinkDB
Position
Unknown
AA seq 2168 aa
MQKVSAADELETKLGFGLFSQGETRLGWLLTFASSSWEDADTGKTFSCVDLFFVTQDGSS
FKTKYKFRPYLYAATKDNMELEVEAYLRRRYQTQVADIQIVHKEDLDLKNHLSGLQKKYL
KVSFDTVQQLVEVKRDLLHIVERNLAKFDAFEAYESILAGKREQRPQDCLDSVVDLREYD
VPYHVRFAIDNDVRSGQWYNVSISSTDVILEKRTDLLQRAEVRVCAFDIETVKLPLKFPD
AEYDQIMMISYMVDGQGFLITNRECVGKDIEDLEYTPKPEFEGYFKVTNVNNEVELLRKW
FSHMQELKPGIYVTYNGDFFDWPFIERRASHHGIKMNEELGFRCDHNQGECRAKFVCHLD
CFSWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAMEKPQTMASYSVSDAVAT
YYLYMTYVHPFVFSLATIIPMVPDEVLRKGSGTLCEMLLMVEAYKANVVCPNKNQADPEK
FYQGKLLESETYIGGHVECLQSGVFRSDIPTSFKLDASAYQQLIDNLGRDLEYAITVEGK
MKMDSISNYDEVEDVIREKLEKLRDDPIREEGPLIYHLDVAAMYPNIILTNRLQPPSIVT
DEVCTACDFNGPEKTCLRKLEWVWRGVTFKGNKSEYYHLKKQIESESVDAGANMQSSKPF
LDLPKVEQQSKLKERLKKYCQKAYSRVLDKPFTEVREAGICMRENPFYVDTVRSFRDRRY
EYKTLNKVWKGKLSEAKASGNSIKIQEAHDMVVVYDSLQLAHKCILNSFYGYVMRKGARW
YSMEMAGVVTYTGAKIIQNARLLIERIGKPLELDTDGIWCALPGSFPENFTFKTIDMKKF
TISYPCVILNVDVAKNNSNDQYQTLVDPVRKTYNSHSECSIEFEVDGPYKAMIIPASKEE
GILIKKRYAVFNHDGTIAELKGFEMKRRGELKLIKVFQAELFDKFLHGSTLEECYSAVAA
VADRWLDLLEGQGKYIADSELLDYISESSTMSKSLADYGQQKSCAVTTAKRLADFLGDTM
VKDKGLRCQYIVAREPEEALLVRNAADIYMISYSRMLLTSQYFTGTPVSERAVPVAIFKT
DDPEKKFYLQKWCKISSYTGIRSIIDWRYYKQRLHSAIQKVITIPAAMQKVANPVLRVRH
PNWLEKKVSDKFRQGKIVDMFSSANKDGVLDKNHSTTQDNVLADIEDFCKENRPSVKGPK
PVAHSYEVDRNHSEGKQQESWDPEFHDISFQNVDKNVDYQGWLELEKRKWKMTLKNKKKR
RFDDLKPCNQIDAHKINKKVCKGRAGVGSYFRRPEEALTSSYLQIIQLVQSPQSGQFFAW
VVVEGLMLKIPLTIPRVFYINSKASIAGNFTGKCINKILPHGKPCYNLMEVNIQEDQFKK
ESKKLAALLADPEIEGIYETKMPLEFSAICQIGCVCKIEDTAKHRNTQDGWKLGELHRIT
TTECRYLENSIPLVCLYHSTSTGRAIYVLYCHALKRMSVVVVNPYGDKELLSSALERQFR
DSCQELSLEPFSWDGILFQVEYVDHPEAAKKNLQKALCEYREENCGPTVAVIECPDFNTM
KEGVKALDDFPCVRIPFNDDDNSYQPVSWQRPAAKIAVFRCASAIQWLDRRIAQSRYAHV
PLGNFGRDWLTFTVDIFLSRALRDEQQVLWVSDNGVPDLGDINNEETFLADELQQTSLLF
PGAYRKVSVELKVHRLAVNALLKSDLVSEMEGGSFLGFEQGVNSRGSSLNDNGSFDENNG
CAQAFRVLKQLIKRLLHDACKSGNIYADSILQHLSWWLRSPSSKLHDPALHLMLHKVMQK
VFALLLTDLRRLGAIIIYADFSKVIIDTGKFDLSAAKTYCESLLTVMGSRDIFKWILLEP
VHYWHSLLFMDQHNYAGIRATEDEISGDEVTIEPKWSVARHLPEYIQKDFIIIVATFIFG
PWKFALEKKWGSAESLEADMVEYLKEQIGTRFISMIVEKIGNIRSHMMDINVSDASWASG
QAPKGDYTFEFIQIITAVLALDQNVQQDVLVMRKSLLKYIKVKECAAEAGFIDPGPSFIL
PNVACSNCGAYRDLDFCRDPALLTEKEWSCADPQCGKIYDKEQMENSLVQMVRQRERMYQ
LQDLVCNRCNQVKAAHLTEQCECSGSFRCKESGSDFHKRMEIFLDIAKRLKFRLLEECIS
WILFATSC
NT seq 6507 nt   +upstreamnt  +downstreamnt
atgcagaaagtttcagccgcagatgaactcgaaactaaacttggatttgggctcttctcc
caaggggaaacgcgcctcgggtggctactcacatttgcatcatcatcttgggaagatgcc
gatactgggaaaacctttagttgtgtggaccttttctttgtcactcaggacggctcttct
tttaagactaagtacaagttccgcccttacttgtatgccgccaccaaagacaatatggaa
ctggaagttgaagcctacttgagacgccgatatcaaacacaagttgctgatattcagatt
gttcacaaagaagatcttgatcttaaaaatcatctatctggcctgcaaaaaaaatatctc
aaagtatcatttgacactgtgcaacaattggtggaagtcaagagggatctgttgcatatt
gtcgaacgaaacctcgcaaaatttgatgcatttgaagcatacgaatccatattggctgga
aaacgagaacaacgtcctcaagactgcttagactctgtggtggacctccgcgagtacgat
gttccttatcatgtccgatttgcaattgataatgatgtgcgtagtgggcaatggtacaat
gtcagtatttccagcactgatgtcatactagagaagaggacggatcttctccaacgcgca
gaagttcgcgtttgtgcattcgatatagagacagtaaagcttccattgaagttcccggat
gctgaatatgatcaaattatgatgatatcctacatggttgatgggcaaggttttctaatt
actaacagagagtgtgttggcaaagacatagaagatctggaatatacacccaaaccagag
tttgaagggtatttcaaagtcacgaatgttaacaacgaggttgaactcctccgaaaatgg
ttttctcatatgcaagagttgaaacctggtatttatgttacatacaacggtgactttttt
gactggccatttatagaacggagagcatctcatcatgggatcaaaatgaacgaggagtta
ggattccgttgtgatcataatcaaggtgaatgtcgagctaagtttgtgtgccatttggat
tgtttttcttgggtgaaacgtgacagctatcttcctcagggaagccagggtctgaaggct
gttacaaaggcaaaactgggttacgatccactggaagtgaatcctgaggacatggttcgg
tttgcaatggaaaagccacagacaatggcctcctactctgtctctgatgctgttgcaact
tactacctatacatgacatatgtccatccgttcgttttttctctcgcaactatcattcca
atggtccctgatgaggttttacgcaaagggagtggcaccctttgtgaaatgcttttgatg
gttgaggcttacaaggcaaatgttgtatgtcccaacaaaaatcaagctgaccctgagaag
ttctaccaaggtaaacttcttgaaagcgagacatatattggtggccatgtagagtgcctc
caaagtggtgttttcagatctgacattccaaccagttttaagctcgatgcatctgcatac
cagcaactgatcgataaccttggtcgggatctggaatatgctatcactgttgaaggaaaa
atgaaaatggattcaatttccaattatgatgaagtagaggatgtaatcagggaaaagctc
gagaagttacgggatgatcctatacgtgaagaggggcctcttatttatcaccttgatgtc
gcggcgatgtatccaaatatcatcttaacaaacaggcttcagccaccatcaatagttacg
gatgaggtttgcacagcatgtgatttcaacggcccggaaaagacctgtcttagaaaactt
gaatgggtttggcgtggggtgacgttcaagggaaataaaagtgaatattaccatctgaag
aagcagattgagtctgaatctgttgatgctggtgcaaatatgcagtcttcaaaacctttt
cttgatctgccaaaggtggaacaacaatccaaattaaaagaacgactgaaaaaatactgt
caaaaggcatatagccgagtacttgacaagccattcactgaagttcgcgaggctgggata
tgcatgagagaaaacccgttctatgtggacactgtgcgtagctttcgagataggaggtat
gaatacaaaacacttaacaaggtctggaagggaaagttgtcagaggccaaggcaagtggc
aattcaatcaagatccaggaagcacatgacatggtagtggtttacgattccttgcagcta
gctcataagtgtatacttaattccttttatggatatgtcatgcgaaagggcgcaagatgg
tactccatggaaatggctggtgtagttacttatactggagccaaaatcatccagaatgct
cgtttgcttattgagcgaattgggaaaccacttgagctggatacagatggtatatggtgt
gctctccctggatcttttcctgagaactttacttttaaaacgatagatatgaagaaattc
accatctcgtatccgtgtgtaatacttaatgttgatgtggcgaagaataattcaaatgac
caatatcagactctagtagatcctgtacgaaagacatataattcacatagcgaatgctca
attgaatttgaagtggatggaccgtacaaggcaatgattattcctgcatccaaggaagag
ggaatcttaattaagaagcggtatgctgttttcaatcatgacggaaccatagcagaactc
aaggggtttgagatgaagcgtagaggagagctgaaactcattaaagttttccaggccgag
ctatttgacaaatttctgcatggatcaacccttgaagagtgttattctgctgttgcagct
gttgcagatcgttggcttgacctactcgagggtcaaggaaaatatattgccgatagtgaa
ttgctagattatatatcagaatcaagcactatgagcaaatcgttagcagattatggtcaa
caaaagtcatgtgcagtgaccacagcaaaacgcctggctgattttcttggtgatacaatg
gtcaaagataaaggactgcgctgccaatacatcgttgctcgtgaaccagaggaagctctc
ttggttaggaacgctgctgatatttacatgatctcttattcaagaatgttgctcacgtct
cagtattttactgggacacctgtaagtgaacgtgctgtccctgttgccatatttaaaacg
gatgatcctgaaaaaaagttttatctgcaaaaatggtgcaagatatcatcatatactgga
atccgttcaattattgactggaggtattacaagcagcgtcttcattcagctattcaaaaa
gttattaccattcctgctgcaatgcagaaggtggcaaatcctgtacttagggtgcgtcat
cctaattggctcgagaaaaaggtctctgacaaatttcgtcagggaaaaatagttgatatg
tttagctcagcaaacaaagatggtgtcttggacaaaaatcattcgacaactcaagataat
gtactggcggatattgaagatttttgcaaagaaaacagaccttccgtaaaagggccaaag
ccagttgcgcattcatatgaagtcgatagaaatcactctgagggtaagcagcaagagagt
tgggatccagagttccatgatatctcatttcagaacgttgacaagaatgtagattaccaa
ggatggcttgaactggaaaaaagaaaatggaaaatgactctaaagaataagaaaaaaaga
aggtttgatgatctaaagccttgtaatcagattgatgctcacaagataaataaaaaagtc
tgtaagggaagagcaggtgtaggctcatactttaggaggcctgaagaagctttgactagt
tcctatttgcagataatacagttggtccaaagtccacagagcgggcaattttttgcttgg
gttgttgtggaaggattgatgcttaagatcccattgacgatcccaagggtgttttacatt
aattccaaagcttctatagctggaaacttcacgggaaagtgtatcaacaagattcttcct
catggaaagccttgttacaatttgatggaggtcaatattcaggaagatcaatttaaaaaa
gaaagcaaaaagcttgccgctctacttgcagaccccgaaattgagggcatatatgaaact
aagatgcctctggagtttagtgctatatgtcagattggatgtgtatgcaaaattgaagac
acggccaaacaccgtaacacccaagatggatggaaacttggtgaacttcacaggataact
acaactgagtgtcgctacttggagaattcaattccacttgtttgtttgtatcacagcacc
tcaacaggtcgtgctatttatgttttatattgtcatgctttgaagcgtatgtctgttgtg
gtagtcaatccttacggtgacaaggaattattatcatctgccctagagagacagtttaga
gatagttgccaagaattgtcacttgagccattttcttgggatggtatccttttccaggtc
gagtatgttgaccatccagaagctgccaagaaaaatttacaaaaagcgctctgtgaatac
agagaagaaaattgtggaccaactgtggcagtcattgaatgccctgactttaacaccatg
aaggaaggtgtaaaggccctggacgatttcccatgtgtgaggattcccttcaacgacgat
gacaatagttatcagcctgtctcctggcaacgtccagcagcaaaaatagcagtgttccgt
tgtgcttcagcaattcagtggttggatcggaggattgcccagtcaagatacgcccatgtg
cctctggggaattttggacgtgattggttaacgttcacagtagatatcttcctgtccagg
gcactccgtgacgagcaacaggttctttgggtctcagataatggtgttccagaccttgga
gatataaacaatgaagagacatttctagctgatgagttacaacagacaagtttgctattc
cctggagcgtacagaaaagtgtctgtggagttaaaggtccatagattagctgttaatgcc
cttctgaaaagtgacctggtgagtgaaatggaaggaggcagctttttgggatttgaacaa
ggtgtgaattctagaggaagtagcttaaacgataatggcagttttgatgagaataatgga
tgtgcgcaagcatttcgtgtcctgaaacaattgatcaagcgcttgttgcatgatgcgtgt
aagtctggcaatatatatgctgattccattttgcaacatctgtcttggtggctccgcagc
ccttcctcaaagcttcacgatccagctctccatctcatgcttcacaaggtcatgcaaaag
gtgtttgcgctgcttttgactgatttgcggaggttaggtgctataataatatacgcagac
ttctcaaaggtcattatcgacacagggaaatttgatctatctgctgctaagacttattgt
gaaagcttgctcacagtgatggggagtagagatatctttaagtggatcttgcttgagccg
gttcactactggcactcgttacttttcatggaccagcataactatgctggtatccgagct
accgaagatgaaatttcaggtgatgaagtgactattgaaccaaagtggagcgttgcacgg
catttacccgagtatattcagaaggatttcatcataattgttgccacgtttatatttggc
ccctggaaatttgcattagagaaaaagtggggcagtgcagagagtttagaggcagatatg
gtagaatatctcaaggaacagataggaacccggttcataagcatgattgttgagaagatt
ggtaatatcaggtcacacatgatggatataaacgtgtcagatgcatcttgggcttctggt
caagctcccaaaggagattacacgttcgaatttatacaaattattactgctgttctggct
cttgatcaaaacgttcagcaagatgttctggtaatgagaaagagtctgttgaagtacatt
aaagtaaaagaatgtgctgctgaagccggatttattgatcctgggccatccttcatctta
cccaacgtggcttgcagcaactgcggtgcctacagagacctagatttctgcagagaccca
gctctattaacagaaaaagaatggtcatgtgcggatccgcagtgtgggaagatatatgac
aaagagcagatggagaatagccttgtccagatggtgagacagagggagagaatgtaccag
ttgcaggatctagtgtgcaataggtgcaatcaggtgaaagccgctcatttgacagagcag
tgtgagtgttctggatcctttagatgcaaggagagtggttcagatttccacaagaggatg
gagattttcttggatatagcaaagcgcctgaagtttagactgctagaagaatgcatctcc
tggattttatttgccaccagctgttga

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