Arabidopsis lyrata (lyrate rockcress): 9315199
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Entry
9315199 CDS
T01578
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aly04131
]
9315199
Membrane trafficking [BR:
aly04131
]
Protein recycling
Others
EARP complex
9315199
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
CiaD
TetR_C_30
Motif
Other DBs
NCBI-GeneID:
9315199
NCBI-ProteinID:
XP_020883779
LinkDB
All DBs
Position
Unknown
AA seq
1122 aa
AA seq
DB search
MQPNLFPFGSVLGNPFLFNGGGDLNELGSGAGFESSRVFFLLPFLLSQGTGVMDLSKVGE
KFLSSVKSATSLGLLPSPSISDRPEIPARAAAAAAVARALAGLPSDQRLSISSTATELNS
IYGNRPLPQQVEELEEGFYEEDFDPVRHILENVPEDESELAYFEKQATLRLVQLDRVAEN
LSHHVMEHHEVMVKGMNLVRELEKDLKIANVICKNGRRNLTSSMNEASRDLIVHTHSKKK
QALLDMLPILTDLRHARVMQSTLEDLVEEGNYCKAFQVLSEYLQLLDSLSEFSAAQEMTR
GVEVWLGRTLHKLDSLLLGVCQEFKEDSYVMVLDAYALIGDVSGLAEKIQSFFMQEVISE
THSVLKSIVGEDNSAATQYSRLTYSDLCLQTPESKFRQCLLRTLAVLFQLIYSYHEIMSF
TPEKKVESLISPSPATTQKVDSVTESSCNPQDGGLFSGSIPPCTISAEESDGSGTSSSVQ
HASDIAIDESRNSGDTVSSSESPWYYLRKESAAFVSETLQRGRRNLWQLTTSRVSVLLSS
PGASSTSIHQFLKNYEDLSIFILAGEAFCGFEVVDFREKLKGVCENYFTAFHRQSMHALK
MVLEKETWTKLSPDTVQAINFAGLVGDGAPLIISSRSASGSSRFPHSNKSNDSIDPSGNR
SGFSYWLKSGNPFSAKLTHYREDQDYSSVNGGDHEGNDSIHDDVVNPKITDKNHINGGSP
VSEDENEDLLADFIDEDSQLPRRSFTRSQSRSSSSYFNTNDDLTAQTGSSLCLLRSMDKY
ARLMQKLEIVNVEFFKGICQLFGVFFYFVFQVFGQENTNSGGKGVADSFNPRLKSCLSRI
SQECEQWIKPHLSSSPSSSLAFPNTVSLADVTPASPLNTSGHLSGVSFSLKERCAAVDTV
SLVARVLHKSKAHLQSMLMSRNGSLVEDFFDQLVGSVPDLTKHLHRTTARILLHVNGYVD
RIANSKWEIKELGMEHNGYVDLMLGEFKHYKTRLAHGGIPQEVQNRLLKYGIEIFAEILV
EGLSRIKRCTDEGRVLMSLDLQVLINGLQHFVQTDVKEKLKIVVTFIKAYYLPETEFVHW
ARAHPGYTKAQVLGLVNLVATMKGWKRKTRLEVIEKIESASL
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcagccaaatctcttcccattcggttcagttttgggtaatccatttctcttcaatggc
ggtggagatctaaacgaacttggttctggtgctggattcgaaagctctagggttttcttc
ttacttcctttcttattatctcaaggcactggtgtcatggatttatcgaaggttggtgaa
aaattcctcagctctgttaaatccgctacttctcttggtctcttaccatcaccatctatc
tctgatcgtcctgagattccggcacgtgctgcggcagctgctgcggttgctcgtgctttg
gcgggacttccttctgatcagaggttgagtatatcttctactgctactgagcttaactca
atttatggaaatagacctcttcctcaacaagttgaagagcttgaagagggattttatgaa
gaggattttgatccggtaaggcatattttggagaatgtgccggaagatgaaagtgagtta
gcttattttgagaagcaggctaccttgaggttggtacagctggatagagtggcggaaaat
ctgtcacaccatgttatggagcatcatgaagtaatggtgaaggggatgaatttggtaaga
gaattggaaaaagatttgaagattgcaaatgtcatctgcaagaatggaagacgaaatttg
acctcttctatgaatgaggcttcaagagatcttattgtacacactcattccaaaaagaaa
caagctcttctggatatgcttcctatactaactgacctccgccatgcaagagtaatgcag
tcaactcttgaagaccttgttgaagaaggaaactattgcaaggcatttcaagttctatct
gagtatttgcagctgcttgacagtctatctgagttctcagcagcccaagagatgacccgt
ggtgttgaggtttggttaggaagaactcttcataagctggattcacttttgttgggcgtt
tgccaggaattcaaagaagatagttatgtaatggtcctcgacgcttatgcactgatcggt
gatgtctctggtctcgcagaaaagatacaaagcttctttatgcaggaagttatctcagaa
acccactcagtgctaaagagcattgttggggaggataacagtgctgccacccaatatagt
agacttacctacagcgatctatgccttcagacaccagaatccaagtttaggcaatgtctt
ttgagaacactagctgtgctctttcagttaatatattcataccatgagataatgagtttc
acgccagaaaagaaggtagaaagtttgatctcaccaagtcctgcaacaactcaaaaggtt
gattcagtgaccgaaagttcatgcaacccacaggatggtggtctcttttcaggaagcata
cctccttgtaccatttctgctgaagagtctgatggaagtggaacatccagttcagtgcaa
catgcgtctgatattgcaatagatgagtctaggaattctggagatacagtatcaagtagc
gagtcgccatggtactatctacgaaaagaaagtgcagcttttgtttcagaaactcttcag
agaggacgcagaaatctttggcaacttacaacaagtcgtgtgtcagttttgctctcttcc
ccaggtgcttcttcgacaagtatacatcagttcctaaaaaattatgaagacctgagcatc
tttatccttgctggggaagctttctgtggatttgaagttgttgattttagggagaagcta
aagggtgtatgcgaaaattatttcactgcatttcataggcaaagcatgcatgcgcttaaa
atggtcctggagaaggagacatggacgaaactgtcaccagatactgtgcaagctattaat
tttgctggtcttgtgggggatggggctcccctaattatttcttcccgcagtgcctcgggt
tcttccagattccctcactctaataagtcaaatgactcaattgatccaagtggcaacagg
agtggattttcatattggctgaaaagtggaaaccccttctcagcaaagttaactcactat
agagaagatcaagactactcctcggtcaatggaggagatcatgaaggtaatgatagtatt
cacgatgatgttgtgaatcccaagataacagacaaaaaccacatcaacggaggtagtcct
gtttctgaagatgaaaacgaagaccttcttgctgactttattgatgaggatagtcagctt
ccaagacgaagttttacacgtagtcaatcaaggagttcttcttcatatttcaatactaat
gatgatttgacagctcaaacaggatcgtccctttgtcttctaagatccatggataagtac
gcgaggcttatgcagaaactagaaattgttaatgttgaattctttaagggaatatgccaa
ttgtttggggtctttttctatttcgtttttcaagtatttggtcaagaaaatactaattca
ggtggaaaaggagttgccgactctttcaatcctcgtttgaaaagctgcttatcccggata
tcacaagagtgtgagcaatggataaaacctcacctttcatcatcaccatcttcttcactt
gcctttcccaacacagttagtcttgcggatgtgactccagcaagtcccttaaatacttct
ggtcacttatcaggcgtatcttttagtctcaaggaaagatgtgctgctgtggacacagta
tctcttgtggctcgggtattgcataaatcaaaggctcatctccaatcaatgttaatgtca
agaaatggctctctggttgaagacttctttgatcaactggttggttccgtacctgatctg
acaaagcacttacataggacaactgcgaggatactgctgcatgttaatggatatgttgac
cggatagctaattctaaatgggaaatcaaggagcttggaatggagcataatgggtatgtt
gatctgatgctcggggaattcaaacactacaaaacaaggcttgctcatggaggcattcca
caggaggtccaaaaccgcctactgaaatatggaattgaaatatttgcggagatacttgtt
gaaggcttatctcgaataaaaagatgtactgatgaaggacgtgttctcatgtcattagat
cttcaggttctaataaacgggctacagcactttgtgcaaacagatgtgaaggaaaagtta
aagatagtcgtaacatttatcaaggcgtactatctgccagagacggaatttgttcactgg
gcaagggctcatccgggatatacaaaagcacaggtccttggactggtgaatttagtagcc
accatgaaaggttggaaaaggaaaacgcggctggaagttatcgagaagatcgaatcagct
tcactgtag
DBGET
integrated database retrieval system
