Arabidopsis lyrata (lyrate rockcress): 9315329
Help
Entry
9315329 CDS
T01578
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aly03016
]
9315329
Enzymes [BR:
aly01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
9315329
Transfer RNA biogenesis [BR:
aly03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
9315329
Prokaryotic type
9315329
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
9315329
NCBI-ProteinID:
XP_002881100
UniProt:
D7LBM5
LinkDB
All DBs
Position
Unknown
AA seq
507 aa
AA seq
DB search
MAVSFLRIPIPSRVFWYPTRLIRVTPALVRLSSSAAFQPSSTSLSPSSSDNFLADKWESY
RKKKVVIRIGYVGTDYRGLQIQRDDPSLKTIEGELEVAIYKAGGIRDSNYGDLHKIGWAR
SSRTDKGVHSLATSISLKMEIPETAWKDDPQGTVLAKCISKHLPENIRVFSVLPSNRRFD
PRRECTLRKYSYLLPVDVIGIKNSFTSDEIDYHITDFNKILNEFEGEYPFHNYTQRSRYR
RKSEQKIKQRNGRPPRIPKSIKASESEFTEENHREIEEEEEKEMDGESDEHVPPDSDNSQ
VNSRAKWLYEPDETDKLSGAHFRKVFRCRSGKLENSLGFGFVEISIWGESFMLHQIRKMI
GTAVAVKRELLPRDIIRLSLNKFTRIVLPLAPSEVLILRGNSFEVRRLPERPGMEATGES
EEVEKDIEEFYRAVMVPQVSRFLDSEKSPWKEWVEHLDRNDGLIDEELEDVRKGWEEWKA
AKPWMNLKKTEDDEELSSVSVPIHQAL
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggcagtctcgtttctacgaattccaattccttctcgggtcttctggtacccgacccga
cttattcgggtcacaccagcgttagtacgattatcttcctccgccgcatttcagccgtcg
tctacttcactctcaccgtcttcttccgacaactttctcgccgataaatgggaatcatat
cggaagaagaaggtcgtcattcgaattggatacgtgggtactgattacagaggtttgcag
attcaaagagacgacccttctctcaaaactattgagggtgaattggaagttgctatatat
aaggcaggtgggattagagatagtaactatggtgatcttcataagattggttgggctaga
agtagtcgaactgataaaggagttcattctttggcaacgtcaatatcgctgaaaatggag
atccctgagacggcgtggaaggatgatcctcagggcactgttcttgctaaatgcattagc
aaacatcttcccgagaatatcagagttttcagtgttttaccgtcaaataggagatttgat
ccccgaagggagtgtacgctgcggaaatattcttatctcctccctgtcgatgttattggg
atcaagaatagctttacttcagatgagattgactatcacattacggattttaataaaatt
ctaaatgaatttgagggtgaatatcctttccataactatacacagcggtcacgatacaga
aggaaatcggaacaaaaaataaagcaaagaaacggacgccctccaagaataccaaaatca
atcaaagcatcagaatcagagtttacagaggagaaccacagagaaattgaagaagaagaa
gaaaaagaaatggatggcgaatctgatgaacatgttcctcctgattctgataattctcag
gtgaacagtcgtgcaaaatggctgtacgagccagatgagacagataagctgagtggtgct
catttcagaaaagtgtttcgatgtcgtagtggaaagctagagaattcacttggattcggc
tttgtcgagatctccatatggggagaatcattcatgttacatcagatacggaagatgatt
ggaacggccgtggcagtgaagagagagctgcttcctagagacatcataagactatctcta
aacaagttcacaagaatcgttttgcctcttgctccatctgaagtactgatcctgagagga
aacagtttcgaagtgcgtagattgcctgagaggccggggatggaagcaacgggtgaatca
gaagaagtggagaaggatatagaggagttttacagagcagtgatggttccacaggtgagt
agattcttggattctgagaaatctccatggaaagagtgggtggagcatttagataggaat
gatggtttgatagacgaggaattggaagatgtaaggaaaggttgggaggagtggaaagcc
gcgaaaccatggatgaatttgaagaagacagaagatgatgaagaattgagttctgtttca
gtacctattcatcaggctctatga
DBGET
integrated database retrieval system
