Arabidopsis lyrata (lyrate rockcress): 9315551
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Entry
9315551 CDS
T01578
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 2
KO
K15172
transcription elongation factor SPT5
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
9315551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aly03021
]
9315551
03019 Messenger RNA biogenesis [BR:
aly03019
]
9315551
Transcription machinery [BR:
aly03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
9315551
RNA polymerase I system
9315551
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
9315551
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW
KOW6_SPT51-2
KOW4_SPT5
KOW2_Spt5
KOW7_SPT5
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
Motif
Other DBs
NCBI-GeneID:
9315551
NCBI-ProteinID:
XP_020885648
LinkDB
All DBs
Position
Unknown
AA seq
974 aa
AA seq
DB search
MSHYSDDDEDDSEMEEEEDEDEYEPRSSRKGSSGKKRGRSNSDSDGRRGSKKKSSGSAFI
DWEVEVDDDVEDDDDDVEDDNGFIVSGETDLPSEDTNHHRQFYQRGFNPHEEDVDEFEKR
TLERLSSRMHAEDDDELDEFNDIDQQALLPSVCDPKLWLVKCAIGREREVAVCLMQKIID
RGSEFKIRSAIALDHLQNYVYIEADMEAHVKEAIKGMRNIYANQKILLVPIKEMTDVLSV
ESKAIDLSRDTWVRMKLGIYKGDLAQVVDVDNVRKRVTVKLIPRIDLQALANKLEGRENV
KKKAFAPPPRFMNIDEARELHIRVEHRRDPMTGDHFENIDGMLFKDGFLYKKVSTKSIAA
QNITPTFDELERFKRPNENGEIDFVDPSTLFANRKKGHFMKGDAVIVIKGDLINLKGWIE
KVDEENVLIRSNMKGLPNPIAVNERELCKYFEPGNFVKVVSGIHEGGTGMIVKVDQHMLI
ILSDTTKEHIRVFADHVAKSAEVTNGVTKIGDYELHDLVILSDLSFGVIIKLDSEAIQIL
KGVPDSSEVSIVKASEIKYKIWKKSNVQDRYKNVIAVKDVVRVIEGPSKGKQGPVVQIYK
GVLFIHDRHNFEHTGFICTRCSSCVLVGGNFKTPALIPPSPRRFQRADMGYNRAGGRHCG
GQGRRGDDLLVGTYVKIRMGAFKGYSGRLVEVKDKLVRVELEAKIVTVERTAISDMTDNV
ATPSHYNMGSQTPMHPSRTPLHPCMTPMRDSGATPIHDGMRTPMRGRAWNPYMPMSPPRD
NWEDGNPGSWGTGPYEASTPGSGWGSSTPSRSSYSDAGTPINNANAPSPMTPSSASYLPT
TPGGQPMTPGTDLDVMSHDLGGDAETRFVPGILVNVHKAGEDSKPGVIRDVLLDGSCVVA
LGHRGEGETIMATQNNVSLVCPKKNERVKILGGKYGGSTGKVIGEDGWDGIVKLDESLDV
KIMKLAILAKLVHE
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgtctcactactcagacgacgatgaggatgattcggagatggaggaggaggaggacgaa
gacgaatatgagccgagaagtagccgcaaaggtagctcagggaagaaaaggggaagatca
aattcagattccgatggtcggcgagggagtaaaaagaagtcttcgggttccgccttcatt
gactgggaggttgaggtggatgacgacgtagaagacgacgacgatgatgttgaagatgat
aacggtttcattgtaagtggtgaaactgaccttcctagtgaggatactaatcatcatagg
caattttaccaacgggggtttaatcctcatgaagaagatgtcgacgagtttgagaagaga
actttggaaaggttgtcttctaggatgcatgcagaggatgatgatgagcttgatgagttt
aacgacattgatcaacaagcgcttttgccatcagtctgtgacccaaaactgtggttggtc
aaatgtgcgattggccgtgaaagagaagttgctgtttgtcttatgcaaaaaatcatagat
agaggatcagagttcaagattagatctgctattgcccttgatcatcttcaaaactatgta
tacattgaagcggatatggaagctcatgtgaaagaggctatcaagggcatgcggaatatt
tatgctaatcagaagattttacttgtccccataaaagaaatgacagacgttctttctgtc
gaaagtaaagcaatcgatctatcccgtgatacatgggttagaatgaaacttgggatatat
aagggtgatctagctcaggtggttgatgttgataatgtgcgtaagagggtcacagtcaag
ttgatcccaagaattgatctgcaggctctagccaataagctggaaggaagagagaatgtc
aagaagaaagcttttgctccacctccacgtttcatgaacattgatgaggcaagggaactt
cacatacgtgttgagcaccggcgtgatccaatgacgggtgaccactttgagaatatcgat
ggtatgcttttcaaagatggttttctttacaagaaagtatcgacgaagtcaattgctgct
cagaatattacaccaaccttcgatgaacttgaaagattcaagagaccaaatgaaaatggg
gagatcgacttcgttgatccctccactttatttgcaaatagaaagaagggtcatttcatg
aaaggtgatgcggttattgttatcaagggggatcttataaacttaaagggttggattgag
aaagtagatgaagagaatgttcttatcagatcgaatatgaaaggtcttcctaatcctatt
gcggtaaatgagagagagctttgcaaatactttgaacctggaaattttgtgaaggttgtg
tctggcatccatgaaggaggaactggcatgattgtcaaagttgatcagcatatgcttatc
attctgtctgatacaaccaaagaacatattcgcgtcttcgctgatcatgtcgccaagagt
gcagaagtgactaatggtgtcacaaaaattggagactatgaacttcatgatcttgtgatt
ctaagtgacttgagctttggagtaatcataaaacttgatagtgaagctatccagattctt
aaaggggttcctgacagctcagaggtctctattgtcaaagccagcgaaataaaatacaaa
atttggaagaaaagcaatgttcaagaccgttacaaaaatgtcatcgcggtgaaagatgtt
gtcagggtcattgagggtcctagcaaaggtaaacaaggtccagtggtgcaaatctacaaa
ggagtgttgtttatacatgaccggcataactttgaacacactggatttatctgcactaga
tgctcatcttgtgttcttgttggtggcaatttcaagacaccagccctgattcctccatct
ccaagaagatttcaacgggcagacatgggatataaccgagctggagggagacattgtggt
ggacaagggagaaggggtgacgatcttttggtaggtacttatgtgaaaattcgtatgggg
gctttcaagggatatagcgggcgtttagttgaagtcaaagataagttagtgcgtgtggaa
ctcgaggccaagattgtgacagttgagcggacggcgatatcagatatgactgataatgta
gccacaccttctcattataatatgggaagccaaactcctatgcatccttcccggactcca
cttcatccttgtatgactccgatgcgggattctggagctacacctatccatgatggaatg
aggacacctatgcgtggtagagcttggaatccttacatgccgatgagtcctcctagggat
aactgggaagatggaaacccgggatcatggggaacaggtccatatgaagcatctacgcct
ggatcaggatggggtagtagtactcctagtcgtagtagttacagtgatgctggaacacca
ataaacaatgctaatgccccaagtcctatgacaccaagctcagcttcctacctacctacc
acacccggaggacaaccaatgactcctggaaccgatctcgatgtcatgtctcatgattta
ggtggagatgcagaaacaaggtttgtgcctggtattttggtcaacgtacacaaagctgga
gaggatagtaaacccggtgtcatccgagatgttcttctggatggctcatgtgtagtcgca
cttggacacagaggtgaaggcgagacgataatggcgacacagaacaatgtgagcctagtt
tgtccaaagaagaacgaacgtgtgaagattcttggaggcaagtatggtggttcaacaggt
aaggtcattggtgaagacggatgggacggtatagttaagctagatgaaagtctcgatgtc
aagataatgaagctggctatattagccaagttagttcatgagtga
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integrated database retrieval system
