Arabidopsis lyrata (lyrate rockcress): 9315688
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Entry
9315688 CDS
T01578
Name
(RefSeq) polyadenylate-binding protein 7 isoform X2
KO
K13126
polyadenylate-binding protein
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015
mRNA surveillance pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
9315688
09123 Folding, sorting and degradation
03018 RNA degradation
9315688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9315688
03041 Spliceosome [BR:
aly03041
]
9315688
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
9315688
mRNA cycle factors
Stress granule specific factors
9315688
Spliceosome [BR:
aly03041
]
Complex C
Other components
Complex C specific factors
9315688
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_7
RRM_RdRP1_2
RBD_DEAH11
RRM_Nup35
RRM_3
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
9315688
NCBI-ProteinID:
XP_002881458
UniProt:
D7LJ60
LinkDB
All DBs
Position
Unknown
AA seq
609 aa
AA seq
DB search
MATVHAALSAADASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDAS
TGRSLCYGYANFLSRQDANLAIEKKNHSLLNGKMIRVMWSVREPDARRNGVGNVFVKNLP
ESITNAVLQDMFKKFGNIVSCKVATFEDGKSRGYGFVQFEQEDAAHAAIEKLNSTTVAGK
EIYVGKFMKKTDRAKAEEKYTNVYMKNLDADVNEDLLREKFSEFGKIVSLAIAKDENGLC
KGYAFVNFDKPEDARWAAETMNGTRFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQMMK
AKVSNIYVKNINVGVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDA
VKTFHGKMFHGKPLYVATAQKKEDRKMQLQVQFGNCVEGGGSSSSASFIPGTYAPLYYTN
THPGMVYQSYPPTWKSANMISSSYPNSQALTYPSVVGNAPRKIKQNRKGKLDRNAVSYVP
NVYQSTQMLPLSRDFSNQQLNRTYGRGKEMKKPIQQRQSETIVMEKQLLGELLYPLVEKL
EPQLANKITGMLLEMDKSELLLLLKSPQELAVRVEEAFEVLKSAKTNVTGPNTLRSDFLA
SGIAGVSIK
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgttcacgctgcattatctgcggcggatgcttcttcttcgggatcgagttct
cctgtgacggcgtcgctatacgtcggagacttgcaccctagcgtcaccgaaggtatactc
tacgacgcgttcgccgagttcaagagcttaacttctgttcgtctctgtaaagacgcttct
actggtcgctctctctgttatggctacgctaactttctctcgcgtcaagacgctaacctt
gccattgagaaaaagaatcacagtctgttgaatggaaaaatgattcgagtaatgtggtca
gttcgagagccagacgctaggagaaatggggttggaaatgtcttcgttaagaatttgcct
gagtcaatcaccaatgcggttctgcaagatatgttcaagaaatttgggaacattgtttcc
tgtaaggttgcaacttttgaagatggaaagagtcggggatatggttttgttcagtttgag
caagaagacgccgcacatgctgctattgagaaattgaacagtaccactgttgctggcaag
gagatctatgttggaaaattcatgaaaaagactgatcgagcaaaagctgaggaaaagtac
acaaacgtgtacatgaagaatctcgacgcagatgtcaatgaggatcttttaagggaaaag
ttttcagagttcgggaaaattgttagcctagcaattgcaaaggatgagaacggattatgt
aaaggatatgcatttgtcaactttgacaaaccagaggatgcaagatgggcagcagaaaca
atgaatggaacacgatttggttcaaagtgcctatatgtaggaagggcacagaagaaggca
gaacgggagcaactgctaagggaacaatttaaagagaaacatgaagaacagatgatgaaa
gccaaggtgtcgaacatatatgtgaaaaacatcaatgttggtgttactgaggaggagctg
agaaaacacttcagtcaatgtgggacaatcacttcgacaaagctgatgtgtgatgagaaa
ggaaaaagcaagggatttggatttgtgtgcttctcaacacctgaagaagctattgatgct
gtgaaaacctttcatgggaaaatgtttcatgggaaaccactatatgtggctactgctcaa
aagaaagaggacaggaagatgcagttacaggttcaatttgggaactgtgtggaaggagga
ggaagcagctcttcagcatctttcataccagggacatacgctcctctctactacacaaat
actcatcccgggatggtatatcagtcataccccccgacgtggaagtctgctaacatgatc
agttcttcataccctaactctcaagcactcacatatccttcagtggttggcaatgcgcca
agaaagattaagcagaacagaaaaggaaagttggataggaatgctgtttcgtatgtgcca
aatgtgtatcagtctactcaaatgcttcctttgtcaagagatttttcgaaccagcagctt
aacagaacctacggtcgtgggaaagaaatgaagaaaccaatccaacaaagacagtctgaa
acaattgtgatggagaagcaattgctcggagagctgctctaccctcttgtggagaaactc
gagccccaacttgccaacaaaatcacagggatgcttctggaaatggacaagtcggaattg
cttcttttgctgaaatcaccacaagaattggctgttagagtcgaagaagcgtttgaagtt
ctgaaatcagccaagacaaatgtgaccggtcctaacactcttcgttctgatttcttggcg
tctggcattgctggtgtttcgattaagtga
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integrated database retrieval system
