Arabidopsis lyrata (lyrate rockcress): 9315958
Help
Entry
9315958 CDS
T01578
Name
(RefSeq) E3 ubiquitin-protein ligase SHPRH
KO
K15710
E3 ubiquitin-protein ligase SHPRH [EC:5.6.2.-
2.3.2.27
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
aly04121
]
9315958
Enzymes [BR:
aly01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
9315958
Ubiquitin system [BR:
aly04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
9315958
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
SHPRH_helical-2nd
SHPRH_helical-1st
Helicase_C
PHD_JHD1
zf-C3HC4
zf-RING_UBOX
PHD
zf-RING_2
RING_XB3-XBAT31
zf-C3HC4_2
PHD_5
RNPP_C
TPR_10
TPR_2
TPR_1
TPR_12
Motif
Other DBs
NCBI-GeneID:
9315958
NCBI-ProteinID:
XP_020885563
LinkDB
All DBs
Position
Unknown
AA seq
1651 aa
AA seq
DB search
MGRRKQSKPQRSVGLITQTGSESDRKDLPGDEAEGSGEKNVEDIDKPYYVNICSSSRISE
QQQHFDIAEVVLTNFSLRERVGSSSTVTTPIEVDHDLDCSLRFRLCNVTNFVDRIKLGHW
PVLSSSDITLELVDNKVSDDEAGSVIWSASFDGPGEGVSGLAHLASIKFLTLRLMPGNQG
LLSPRVRVEMLQQAFDSCDSLLENTRQIWKKSMIHVMSWLRPEVMTSEARYGTRFNVKDI
ESSVASEAETLDSSKQSGFDAAAFYEAIKPSKTNTMLGDDITDLLPELRPYQRRAAYWMV
QRERGDPITVGDKEDNQFISPLSISVGFLDSATKMFFNPFSGNISLAPEYFSPRIQGGIL
ADEMGLGKTVELLACIFSHRKPAEDEISVSNGSSFTDDLNAGLRRLKRERVECICGAVSE
SRKYKGVWVQCDLCDAWQHADCVGYSPKGKGKKASQHVDEKVSQKKSKKDATEIIDREGE
YICQMCSELLQVTASPISTGATLIVCPAPILPQWHSEITRHTRLGSLVTCIYEGVRNASL
SEEPMIDITELLNADIVLTTYDVLKEDLTHDFDRHDGDRHCLRFQKRYPVIPTPLTRIFW
WRICLDEAQMVESNAAAATEMALRLYTKHRWCITGTPIQRKLDDLFGLLKFLKANPFDVS
RWWIEVIRDPYERRDTKAMEFTHKFFKQVMWRSSKVHVADELQLPPQEECVSWLKFSAIE
EHFYSRQHETCVSYAREVIETLKRDILKRGHTSSDNPLITHAEAAKLLNSLLKLRQACCH
PQVGSSGLRSLQQTPMTMEEILMVLVKKTQKEGEEALRVLIVALNGIAAIAMLKQEFSEA
VSLYKEALSITEEHAEDFRLDPLLNIHILHNLAEILPMAKSYGVKLSASGRPEIKIDVQD
DDHHRASKRQRINELESLTHDSPDSGLKKDGEYHEECKTLNIVCDTMKVKYLSAFNSKLS
AAQQEFKKSYNQVSESLSNMGKQRSVWWLDALQLTEQNKDFSSELTRKIEEILHGSLNNS
SSSRASSRFRTIHGMKLHLQTCMDMLESSRKKVIDRILEIDQTMEKPKLEDIERISNCKY
CKKKDDGPTCIHCELDELFQEYEARLFRLNKSRRGVMEIAAAEETVHLQKKRDALNLFFI
GLSSRSKDLNAPRGDDEEPTKRNAGDTVVVSKSPSETEIVLGVIRNHCKTHLDRESKLAA
TKHLHTLEVMRKEYAHARALARAQAQLLRAYDEINMSTMRLQLKESEDDTSIYALSRDEL
DVASVLNTNDKFMAQSSVLSIKGKLRYLKGLIKSKQKQESESPDLSSPIHETLEASDPVE
QEGENLLKRDEACPICQEILRNQKMVFQCGHSTCCNCFFAMTERKSVQETLQKWVMCPIC
RQHTDVRNIAYADDRRNSSSSDQDHKDNEASLVVQGSYGTKIEAVTRRILWIKSSDPQAK
VLVFSSWNDVLDVLQHAFAANSITCIRMKGGRKSQTAISKFKGSEKETQKTNQKEENPIQ
VLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPTLVHRFLVTGTV
EESIYKLNRNKNTNLSSFSSRNTKNQDQQFLTLRDLESLFASPAAETAEMEENPGERQEN
LRDLPPSVAAALAAERRIKESTASSSATNAS
NT seq
4956 nt
NT seq
+upstream
nt +downstream
nt
atgggtaggagaaaacaatccaagccacagcgttcagtgggtttgatcactcaaactggt
tctgaatccgatagaaaggatttacctggcgacgaagctgagggttcgggggaaaagaat
gttgaagatatcgataagccgtactatgtgaacatatgttcaagtagtcgtatttctgag
cagcagcagcactttgatatagctgaagttgttctaacgaattttagtttaagagaacgt
gtaggaagtagtagtacagtcacaacacctattgaggttgatcatgatctggattgctcg
ttacggtttcggctttgcaatgtgaccaattttgttgatcggattaagcttggtcactgg
ccggtattgtcttccagtgatataactttggaattggttgataataaagtgtctgatgat
gaggctggatcagtgatttggtctgcaagttttgacggtccaggggaaggggtttcgggt
cttgctcatttggcaagtataaagttcttgactttaaggctgatgccgggtaatcagggc
ttgttgtctcctagagttagagttgagatgcttcagcaggcttttgattcttgtgattct
cttcttgagaatacaaggcagatttggaaaaagagtatgattcatgtcatgtcctggttg
aggccagaggtaatgacatcagaggctaggtatgggacaagattcaacgtgaaggatatt
gagtcatcagttgcgtcggaagctgaaactttggactctagtaagcagtctgggtttgat
gctgctgctttttatgaagccataaagccatcaaagacgaatacgatgcttggagatgat
ataactgatttgctcccagaacttaggccgtaccaacgacgggcagcttattggatggtt
cagcgagagagaggcgatccaataacggtgggagacaaggaagacaaccaattcatttca
cctttgtctatctccgtgggattccttgactctgctacaaaaatgttctttaacccattc
agtgggaatatctcattggcaccagagtatttttcacctcgaattcagggcggtatcctt
gctgatgaaatgggattgggaaaaacggttgaactacttgcttgcatcttttctcatcga
aaaccagcggaggatgaaatttctgtgtctaatggttcatcatttactgatgatttgaac
gctggcttgagaagattgaaaagagaacgtgttgagtgcatatgtggagctgtcagtgaa
agtcgcaaatacaaaggagtttgggtacagtgtgacctttgtgatgcttggcagcatgcc
gattgtgtaggttattcacctaaagggaaaggtaagaaagctagtcaacatgttgatgaa
aaagtatctcaaaagaagagcaaaaaggatgcaacggaaattattgacagagaaggtgaa
tatatttgccaaatgtgctctgaacttctacaagtcactgcctctcccatctctacgggt
gccactcttattgtctgtccagctcctatattaccgcaatggcattccgagattacacgc
catacacgcttgggatctctcgtaacatgtatctatgaaggtgtgaggaacgcctcactt
tctgaagaacctatgattgacatcactgaactcctcaatgctgacattgttttaactaca
tatgatgtccttaaagaggacttgacacatgacttcgacaggcatgatggtgaccggcat
tgtcttagattccagaaaaggtaccctgttattccgactccactcaccagaatattttgg
tggaggatttgtttggatgaggcccagatggtggagagcaatgcagctgctgcaacagag
atggcgttgagattatacaccaaacaccgttggtgtatcactggaactcctatacaacgc
aaacttgatgacttatttggactattgaagtttcttaaagcaaatcctttcgatgtttca
agatggtggattgaagttataagagacccatatgagaggcgagacacaaaggccatggaa
ttcacgcataagtttttcaaacaagttatgtggcgttcttcaaaagtccatgtggctgat
gagttgcaacttccacctcaagaggaatgcgtctcatggctcaaattttctgcaattgaa
gaacacttctacagtagacagcatgaaacttgtgtgagttatgctcgtgaagttatagaa
actttgaaacgtgatattctcaaaagaggtcatacttcttctgataatcctttaatcact
catgccgaagctgcaaaactgttgaactcgctcttgaaattgcgccaagcttgctgccac
cctcaagtaggaagttcaggtttacgttcattgcaacaaactccaatgaccatggaagaa
attctaatggtccttgtgaaaaagacccagaaagagggagaagaagctcttagagtgtta
attgttgcattaaatgggattgctgctattgccatgcttaagcaagaattttctgaagct
gtgtccttatacaaggaagcattaagtataactgaagaacacgccgaggattttcgtctt
gatccattgttaaatattcacattcttcacaatttagctgagatactaccaatggccaaa
agctacggcgtaaaactttctgcatcaggaaggcctgaaattaaaatagatgtacaggat
gacgatcatcaccgtgcatcaaaaaggcaaaggatcaatgagctcgagagtttaactcat
gattctccagacagtggtttaaagaaggatggagagtatcatgaagaatgcaaaactctg
aatatagtttgtgacacaatgaaagttaagtatttatccgcattcaactcaaagctatct
gcagcacagcaggaattcaaaaaatcatacaatcaggtttccgagtcgttgagcaatatg
gggaaacaacgttcagtttggtggttggatgccctgcaacttactgaacagaataaagac
ttctctagcgagttgaccaggaagattgaagagatcctccatggaagcttaaacaattca
agctcctccagagcgagttctcgctttagaactatacatggcatgaaacttcatctgcaa
acttgtatggatatgctggagagctctagaaagaaagtgatagataggattctagaaatt
gaccagactatggagaaaccaaaattggaggatattgagcgtattagcaactgcaagtat
tgcaagaagaaggatgatggccccacgtgtattcattgcgagctagatgaattattccag
gaatatgaggctaggcttttccgtcttaacaaatctcgcaggggagtaatggaaattgca
gctgctgaagagacggtacatttgcagaagaagagagatgctcttaatcttttctttatt
ggtttgtcatcaagaagcaaggatctaaatgcaccacgtggtgatgatgaggagccaacc
aaaagaaatgctggtgacaccgtggttgtttcaaaatctccatctgagacggaaatagtt
cttggagtgataagaaaccattgcaaaactcatttagatagggaaagcaaattggcagcc
acaaaacatttgcatacccttgaggtgatgcgaaaggaatatgcacatgcaagggccttg
gctagggctcaagctcaactcctacgtgcctatgatgagattaacatgtcaacaatgaga
ctacagcttaaggaatctgaagatgacacatctatctatgctttgagccgggatgagtta
gatgttgctagtgtgctgaacacaaatgataaatttatggctcaatcctcggtgcttagt
atcaaagggaaacttcgttatttgaagggtttgatcaaatccaaacagaaacaagaatcc
gagagtccagatctttcctcaccaattcacgaaacacttgaggcttcagatcctgttgaa
caggaaggagaaaacctgcttaagcgagatgaagcatgcccgatttgtcaagaaattcta
cggaatcagaagatggttttccagtgcgggcattccacttgctgcaactgcttttttgct
atgactgagcgcaaatcagttcaagaaacgctgcaaaagtgggtgatgtgtccaatatgc
aggcagcacacagatgttagaaatattgcatatgctgatgacagacgaaacagttcttcg
tcagatcaagatcacaaagacaatgaagcatcattggtggttcaaggttcatatggaaca
aagatcgaagctgttactagaagaatcttatggatcaagtcaagtgacccacaagcaaag
gttcttgtcttctccagttggaacgacgttcttgatgtattgcaacatgccttcgctgcc
aatagcatcacctgcatccggatgaaaggaggcaggaaatcacagacagccattagcaaa
ttcaagggatctgagaaagaaacccaaaagacaaatcaaaaagaggaaaatccgattcaa
gtgttattgcttttggtgcagcatggtgccaacggtcttaatcttctagaagcacagcat
gttattctggtggagccgcttctaaatccagctgcggaagcgcaagctgttgggcgtgtt
caccggattggacaagagaaacctactctagttcatcggtttctggtaacggggacggtg
gaagagagcatctacaaactgaacaggaataagaatacaaacttaagttcatttagcagc
aggaatacaaagaatcaagatcaacagttcttgacactaagagatctcgaatctctattt
gcttcaccagcagcagaaacagcagagatggaagaaaacccgggagagagacaggagaat
ctgagagatctaccaccctcagtcgctgcagcattagcagccgagaggagaataaaggaa
agcactgcatcctcatcagctacaaacgcatcataa
DBGET
integrated database retrieval system
