Arabidopsis lyrata (lyrate rockcress): 9316002
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Entry
9316002 CDS
T01578
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9316002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aly03041
]
9316002
Spliceosome [BR:
aly03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
9316002
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
Beta-prop_WDR36-Utp21_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_Aladin
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
PRP4
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_WDR41
Beta-prop_DCAF4
Beta-prop_SCAP
WD_LRWD1
Beta-prop_SPT8
WD40_like
Motif
Other DBs
NCBI-GeneID:
9316002
NCBI-ProteinID:
XP_020884022
LinkDB
All DBs
Position
Unknown
AA seq
551 aa
AA seq
DB search
MEPNKEDNVSLPATAQITAPPILQDAASQPGFSAIPPVVPPPMAPIPMMPHPPVARPPTF
KPPVSQNGRAKTSDSDSESDDEHFEISEESRQVRERQEKALQDLLVKRRAAAMAVPTNDK
AVRDRLRRLGQPITLFGEQEMERRARLTQLLARLDMDGQLDKLLIAQEEDVAPKEEVDDE
VLEYPFFTEGPKELREARIEIAKFSVKRAAVRIQRAKRRRDDPDEDMDAETKWALKHAKN
MVLDCSNFGDDRPLTGCSFSRDGKILATCSLSGVTKLWEMPQVTNTIAVLKDHKERATDV
VFSPVDDCLATASADRTAKLWKTDGTLLQTFEGHLDRLARVAFHPSGKYLGTTSFDKTWR
LWDINTGAELLLQEGHSRSVYGIAFQQDGALAASSGLDSLARVWDLRTGRSILVFQGHIK
PVLSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLATA
SYDMKVNIWSGRDFSLVKSLAGHESKVASLDITADSLCIATVSHDRTIKLWTSSGNDEDE
EKEKETMDIDL
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atggaacccaataaggaagataatgtttcattaccagctacagctcaaatcacagcacct
ccaattctacaagatgctgcgtctcagccaggtttctctgccataccacctgtggttccc
ccaccaatggctccaataccaatgatgccacatcctccagttgcccgcccaccgactttt
aagccacctgtttcacaaaatggtagagcgaaaaccagtgactcagattcggaatcagat
gatgaacattttgagatatctgaagagagtaggcaggtcagagaaagacaggaaaaggca
ttgcaagacttgttggtaaagcgtcgtgctgctgctatggcagttccaacaaatgacaaa
gctgttcgggatcgccttagacgacttggccagcccattactctatttggagagcaggaa
atggagagaagagctaggttgactcagcttttggctaggcttgatatggatgggcaactg
gataaactgcttatagctcaagaagaagatgtggctccaaaagaggaagtggatgatgaa
gtacttgaataccccttttttaccgagggtccaaaggaacttagagaggctagaatagaa
attgccaagttttctgtcaagagagctgctgtcaggattcagcgtgcaaagcggcggagg
gatgatccagatgaagatatggatgcagagactaagtgggctttaaagcatgctaaaaac
atggtccttgattgcagtaattttggagatgatcgtcctcttactggctgctccttctca
cgcgatggaaagatacttgccacatgttctctgagtggagttactaaattgtgggagatg
cctcaagttacaaacacgattgctgtcttgaaggatcacaaggaacgtgcaactgatgta
gtgttctcccctgtggatgattgtctagcaactgcttctgctgatcgaactgcaaagctg
tggaaaactgatggaacgctcctacaaacatttgaaggtcatttggatcgtcttgcacgt
gttgctttccacccatcagggaaatacttgggaacaacaagctttgacaagacgtggaga
ttgtgggatataaacacaggagcagaactgcttttgcaagaaggccatagtcgtagtgtc
tatgggattgcatttcaacaagatggagcattagcagcttcttctgggcttgattcactc
gcacgagtttgggatctccgcactggtaggagtattcttgtcttccaaggacacatcaaa
ccggtactctcagtgaatttctctcctaatggttatcacttggcatctggtggtgaggat
aatcaatgccgtatttgggatctaagaatgagaaagtcattgtacattataccagctcat
gccaaccttgtgtctcaagtgaagtatgaaccacaagaaggctactttctggccactgca
tcatacgacatgaaagtcaatatatggtcaggaagagatttctcgctcgttaaaagctta
gcagggcatgagtcaaaagtcgcctctctagatatcactgcagatagcttgtgtattgca
actgtatcacatgaccgcaccatcaagctctggactagcagtggaaatgatgaagatgaa
gagaaagagaaagaaacaatggacatagatctctag
DBGET
integrated database retrieval system
