Arabidopsis lyrata (lyrate rockcress): 9316016
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Entry
9316016 CDS
T01578
Name
(RefSeq) ABC transporter A family member 1 isoform X1
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
9316016
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
aly02000
]
9316016
Transporters [BR:
aly02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
9316016
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
AAA_21
R1_ABCA1
AAA_29
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
9316016
NCBI-ProteinID:
XP_020883061
LinkDB
All DBs
Position
Unknown
AA seq
1882 aa
AA seq
DB search
MGSSMRQLKAMLRKNWLLKTRHPFVTSAEILLPTLVMLLLIAVRTRVDTTIHPARSNIEK
DTIVEVGKGNSPSFPQVLKLLLAEGEFLAFAPDTDETNNMIDILSLKFPELRLVTKIFKD
DIELETYITSAHYGLCTEVRNCSNPKIKGAVVFHEQGPHLFDYSIRLNHTWAFAGFPNVK
SIMDTNGPYINDLEMGINTIPTMQYSFSGFLTLQQVVDSFIIFASQQNIDLPLSHSNLGS
ALSFELPWTLFSPSVIRMVPFPTREYTDDEFQSIVKSVMGLLYLLGFLFPISRLISYSVF
EKEQKIREGLYMMGLKDEIFHLSWFITYALQFALCSGIITACTMGSLFKYSDKTLVFTYF
FLFGLSAIMLSFMISTFFTRAKTAVAVGTLTFLGAFFPYYTVNDESVSMVLKVVASLLSP
TAFALGSINFADYERAHVGLRWSNIWRASSGVSFFVCLLMMLLDSILYCALGLYLDKVLP
RENGVRYPWNFIFSKCFGRKKKNFQNRIPGLETDMFPEDVELNQGEPFDPVIESISLEMR
QQELDGRCIQVRNLHKVYASRRGNCCAVNSLRLTLYENQILSLLGHNGAGKSTTISMLVG
LLPPTSGDALILGNSIITNMDEIRKELGVCPQHDILFPELTVREHLEMFAVLKGVEEDSL
KSTVVDMAEEVGLSDKISTLVRALSGGMKRKLSLGIALIGNSKIIILDEPTSGMDPYSMR
LTWQLIKKIKKGRIILLTTHSMDEAEELGDRIGIMANGSLKCCGSSIFLKHHYGVGYTLT
LVKTSPAVSVAARIVHRHIPSATCVSEVGNEISFKLPLASLPCFENMFREIESYMKNSVD
RSKISEIEDSDYPGIQSYGISVTTLEEVFLRVAGCNLDIEDKQEEIFVSPDTKASLVCIG
SNQKSIMQPKLLESCNEGARVIITSVAKACRLIVVAVWTLIGFISMQCCGCSIISRTMFW
RHCKALFIKRARSASRDRKTVAFQFIIPAVFLLFGLLFLQLKPHPDQKSITLTTAYFNPL
LSGNGGGGPVPFDLSEPIAKEVSQYIEGGWIQHLRNTSYKFPNPKEALADAIDAAGPTLG
PTLLSMSEFLMSSFDQSYQSRYGAILMDGQHPDGSLGYTVLHNGTCQHAGPIYINVMHAA
ILRLATGNKNMTIQTRNHPLPPTKTQRLQRHDLDAFSAAIIVNIAFSFIPASFAVPIVKE
REVKAKHQQLISGVSVLSYWLSTYVWDFISFLFPSTFAIILFYAFGLEQFIGIGRFLPTV
LMLLEYGLAIASSTYCLTFFFTEHSMAQNVILMVHFFSGLILMVISFVMGLIPATASANS
YLKNFFRLSPGFCFSDGLASLALLRQGMKDKSSHGVFEWNVTGASICYLGLESIFYFLVT
LGLELMPFQKVMSFSIGEWWQNFKAFKQGAGSSSTEPLLKDSPGAISADMEDDIDVQEER
DRVISGLTDNTMFYLQNLRKVYPGDKHHGPKVAVQSLTFSVQAGECFGFLGTNGAGKTTT
LSMLSGEETPTSGTAFIFGKDIVASPKAIRQHIGYCPQFDALFEYLTVKEHLELYARIKG
VVDYRIDNVVTEKLVEFDLLKHSHKPSFTLSGGNKRKLSVAIAMIGDPPIVILDEPSTGM
DPVAKRFMWDVISRLSTRSGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKT
RYGNHLELEVKPNEVSSEELENFCQIIQQWLFNVPTQPRSLLGDLEVCIGVSDSITPDTA
SASEISLSPEMVQSIAKFLGNEQRVSTLVPPVPEEDVRFEDQLSEQLFRDGGIPLPIFAE
WWLTKEKFSALESFIQSSFPGATFKSCNGLSIKYQLPFGEGGLSLADAFGHLERNRNRLG
IAEYSISQSTLETIFNHFAANS
NT seq
5649 nt
NT seq
+upstream
nt +downstream
nt
atgggttcatcgatgaggcaattgaaggccatgctccgcaagaattggctcctcaaaact
cgtcatcccttcgttacttcagctgagattttacttccgactcttgtaatgttgctgttg
atagccgtcaggactcgggttgacaccacaattcacccggctcgctcgaacatagagaaa
gatacgatcgtcgaagtgggaaaaggcaactctcctagttttccacaagttttgaagctt
ttgcttgctgagggggaatttttagcttttgcacctgacactgatgaaacaaataacatg
atcgacattttgtctcttaagtttccggaactgcggctagttactaaaatttttaaagat
gacatagagctggaaacttatataacctctgctcattatggtctctgcaccgaagtgagg
aattgttcgaatccaaaaataaaaggagcagtggtattccatgaacaaggacctcatttg
tttgattatagcatccgcttgaaccacacatgggcattcgcaggattccctaatgtcaag
tcgatcatggacacaaatggaccttatatcaatgatctggaaatggggattaataccata
ccaacaatgcaatacagcttcagcggattcttgactcttcagcaggtggtagactctttc
attatatttgcttctcagcaaaatatcgacttgccattatcacattcaaatcttggttca
gctctaagctttgagctgccatggactctgtttagcccctcagtgataagaatggttcca
tttccaacccgcgaatacactgatgatgagtttcaatctattgtcaaaagcgtaatggga
ttgttgtaccttctgggatttctgtttccaatctcccggcttatcagctactctgttttt
gagaaggaacagaaaataagagagggactttacatgatgggcttgaaggatgagatcttt
catttgtcgtggtttatcacatatgcattgcagtttgcattgtgctctgggattattaca
gcttgtacgatgggaagtctctttaagtatagtgataagacattagtcttcacatacttc
tttttatttgggctcagcgcaatcatgctctcatttatgatatcaacatttttcactcga
gcaaagacagctgtggcagttgggaccctaacctttctcggagccttcttcccttactac
actgtaaacgatgaatctgtctccatggtattgaaggtagttgcttctttgctttcgcct
actgcatttgctcttgggtcaatcaactttgctgattatgagcgtgcacatgttggactt
cgttggagcaatatatggcgggcatcttctggagtaagcttttttgtctgcctcttaatg
atgttgctcgactctattctttactgtgcacttggactttatctggacaaggtcctcccc
agagaaaatggtgtgcggtacccatggaacttcatcttcagcaagtgttttgggaggaag
aaaaaaaacttccaaaatcgcattccaggtctcgaaactgatatgtttccggaggatgta
gagcttaatcagggagagccttttgatcctgttattgaatcaataagcctggaaatgagg
caacaagagcttgatgggaggtgcatacaagttagaaatctgcataaggtctatgcctca
agaaggggaaattgttgtgcagttaattcattgcgacttacattatacgagaaccagata
ctttcacttctgggacataatggagctggtaaaagcacaacaatatcaatgcttgttggc
cttcttcccccaacgtctggagatgccctgatacttggaaacagtattataacaaacatg
gatgagatacggaaagaactaggtgtttgccctcagcatgacatcctctttccagaactg
acagttagagaacacttggagatgtttgcggttcttaaaggtgttgaagaagattccttg
aagagcacagttgttgatatggcggaggaagtgggattgtccgataaaattagtacactt
gtgcgggcactttccggaggcatgaagaggaaattgtcacttggaatcgcattgataggt
aacagtaagatcatcattctcgatgaaccaaccagtggaatggatccgtactcaatgcgt
ctaacatggcagttaattaagaaaattaaaaagggtagaataatattgttgacaacacat
tccatggatgaagctgaagaacttggagatcggataggaatcatggcgaacgggtctctt
aagtgttgtggcagttcgattttcctgaagcatcactatggggttggttacactcttacg
ctagtaaagacttctccagctgtctctgttgccgcacgtatagttcatcgtcatattcct
tcagcaacctgtgtgagtgaggtgggaaacgaaatttctttcaagctgcctttggcttcc
ttgccttgtttcgaaaacatgttcagagaaatcgaaagttacatgaagaattctgttgac
agatctaagattagtgagattgaggactcagattatcctggtattcagagttatggtata
tctgtcacgacacttgaagaggtgtttctgagagttgctggctgtaacttagatatcgaa
gataagcaggaagaaatatttgtttctcctgataccaaggcttctctggtatgcattgga
tctaatcagaaaagtattatgcaacccaagttgctagaaagttgtaatgagggggctaga
gttataattacctcagttgcaaaagcttgcagattaattgttgttgcagtttggactctc
attggattcattagcatgcaatgttgtggttgttccattatctcgaggacaatgttttgg
cggcattgcaaagcattgttcataaaaagagccagatctgcttccagagaccgcaaaaca
gtggcattccaattcatcattcctgcagttttcttgctttttggccttctttttcttcag
ctcaagccacatcctgatcagaaatccataactttgacaactgcatattttaatcctctc
ctgagcggcaacggtggtggtggtccggttccttttgatctgtctgagccaattgccaaa
gaggtttctcaatatatcgaaggaggctggattcagcacttgaggaatacttcatataaa
tttcctaatccaaaggaggcactggctgatgcaattgatgcagcaggtcccacgttgggc
cccactctactttcaatgagcgaatttctgatgtctagttttgatcagtcctaccagtca
aggtatggggcaattttaatggatggccagcatccagatgggagtttaggatacaccgta
ttacacaacggtacttgtcagcatgctggtccaatctacatcaatgttatgcatgctgcg
attctccgacttgctacgggtaacaagaatatgacaattcaaacccgaaaccatcctttg
ccccctacaaaaactcagcgcctacagcgtcatgatttggatgccttttccgccgcaatt
atcgttaatattgcgttctcgttcatcccggcctcctttgctgttcccattgttaaggag
cgggaggtgaaagcaaagcatcaacagcttatcagtggggtttctgttctttcatactgg
ttatcaacgtacgtatgggatttcatcagtttcttatttccgtcaacatttgcaataatc
ctcttctacgcttttggtctggaacagtttatcggaataggacggtttcttccgactgtt
cttatgctcctggagtatggcttggcaattgcatcatcaacgtactgtcttacatttttc
ttcaccgagcatagcatggctcagaatgttattcttatggtgcacttcttctctggtctt
atccttatggttatctcatttgttatgggccttattccagcgactgctagtgcaaattca
tatctaaagaacttcttcagattatcaccaggattttgcttctctgatggattggcttca
ttagcgcttctaaggcaggggatgaaagacaaatctagtcatggggtgtttgaatggaac
gtcactggagcgtccatctgttacctgggtttggagagtatattctacttccttgtgacg
cttgggcttgagctcatgcctttccaaaaggtgatgtcgttctcaattggggagtggtgg
cagaatttcaaagctttcaaacaaggtgctggttctagttctacagagccacttctcaag
gattcgcctggagccatttccgctgatatggaggatgacatagacgtgcaagaggaaaga
gacagggtgatttcggggttgacagacaacaccatgttctacttacagaacctgaggaag
gtctatcctggtgacaaacatcacggcccaaaagtagctgtacagtctttgactttctcg
gtccaagcaggagaatgttttggctttttagggacgaatggagctgggaagactactacc
ttgtctatgttatctggagaagaaactccaactagtggaactgccttcatctttgggaaa
gacattgtagcgagtcccaaagctattcgtcagcatattggctactgcccccagtttgac
gctttattcgagtacttgactgtgaaggagcaccttgaactttatgcaaggatcaaagga
gtagttgattatagaattgataatgtggttacggaaaagttagtcgagtttgacttgttg
aaacattctcacaagccatcgttcactcttagcggcggaaacaagcgcaaactatctgtt
gctattgcaatgattggagatcctcctattgtcatcctcgatgaaccatctacaggtatg
gatcctgttgccaaaagattcatgtgggatgtgatatcccgcttgtcgacaaggagtgga
aagacagcagtcattctgactactcatagcatgaatgaagctcaagcactttgcactagg
atcgggatcatggtaggaggccgcctaagatgcataggtagtccacaacacttaaagaca
cgctacggaaaccaccttgagttagaggtcaaacccaatgaagtcagcagtgaggaattg
gagaacttttgccaaataattcagcagtggctgtttaacgttcctacgcagcctagaagt
ttgctgggtgatctcgaagtttgtataggtgtctctgactcgattactcctgatacagct
tcagcatcagaaatcagtttgtcaccagaaatggtacaaagtattgccaagtttcttggt
aatgagcagagagtgagtactctagtacctccagtgcctgaggaagatgtgcgattcgag
gaccagttatcagagcagctgtttcgagatggtggtattccacttccaatatttgccgag
tggtggctgaccaaagaaaagttttcagcattggagtctttcatacaatcttcgtttccc
ggtgcaacattcaaaagctgcaatggactgagtatcaagtaccagttgccgtttggagaa
ggaggattgtcacttgcggatgcctttggacaccttgaaagaaaccggaatcggctggga
atagctgaatacagcataagtcaatccacacttgagaccatattcaatcattttgcagct
aactcgtag
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integrated database retrieval system
