Arabidopsis lyrata (lyrate rockcress): 9316057
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Entry
9316057 CDS
T01578
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 37
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9316057
03041 Spliceosome [BR:
aly03041
]
9316057
03036 Chromosome and associated proteins [BR:
aly03036
]
9316057
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
9316057
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
9316057
mRNA cycle factors
Common to processing body (P body) and stress granule
9316057
Spliceosome [BR:
aly03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
9316057
Chromosome and associated proteins [BR:
aly03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
9316057
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
9316057
NCBI-ProteinID:
XP_020884457
LinkDB
All DBs
Position
Unknown
AA seq
627 aa
AA seq
DB search
MSASWADVADSENTGSGSFNQNSHPSRPAYVPPHLRNRPATSEPVAPLPANDRVGFGGPP
SASRWAPGGSSVGVGGGYRADAGRPGSGSGYGGRGGGGWNNRSGGWDRREREVNPFDNDD
SEPEPAFSEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKP
TPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVI
LSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLL
ERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQR
LAADFLANYIFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTL
VFVETKRGADSLENWLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGL
DIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQ
EVPAWLTRYASRSSFGGGKNRRSGGRFGGRDFRREGSFGRGGGGGGGYGGGGGYGGGGGY
GGGGGYGGGYSGAPSGGYGGEPPSAWD
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcatcatgggctgatgtggctgactcagagaacacgggttctgggtcttttaat
cagaattctcatccctcacgacctgcttatgttcctccacatctaaggaacaggcctgca
acttctgagcctgttgctcctttgccagctaatgatcgtgtaggctttggtggtccacct
tctgcctctcgatgggctcctggtggtagttctgttggtgttggtggtggttatagggct
gatgcaggtcgccctggctctggctctggctatggtggacgaggaggtggtggttggaac
aacagaagcggaggctgggaccgtagggaacgtgaagtaaacccctttgataatgatgat
tccgaaccagaaccagccttttctgagcaggataataccgtcattaattttgacgcctat
gaagatattccaattgagaccagtggggataatgtgcctcctcctgttaacacattcgca
gagatagatctcggggaggccttgaatctaaatatccgtagatgcaaatatgttaagcca
acacctgtacagcgtcatgcgatcccgatattgcttgaagggagggatttgatggcctgt
gctcagacagggtctgggaagacagctgctttttgctttccaattattagtgggataatg
aaagatcagcatgtacagagaccccgtggttcacgaacagtctaccctcttgcagttatt
ctctcaccaacaagagagttggcaagtcagatacatgatgaggctaaaaagttctcctac
caaactggtgtgaaggtggttgttgcatatggaggaacacctattaaccagcagctccgg
gaacttgagaggggagtcgatattcttgtggcaactcctggtcgattaaatgatttgctc
gagagagctagagtctctatgcagatgattagatttttagctcttgatgaggccgataga
atgcttgacatgggttttgaaccacaaattagaaagattgtcgaacaaatggacatgcct
ccacgtggagttagacagacactgttgtttagtgctacttttcccagagaaattcagaga
ctggcagctgacttcctagcgaattatatatttttggctgtgggtagagtgggttcaagt
accgatttaattgtccaaagggttgagtttgtccttgactctgacaaaagaagtcatctc
atggacctgcttcacgctcagagagagaatggcatccaaggcaagcaagcgctgacctta
gtttttgtggagacaaagaggggagctgactctttggaaaattggttgtgcatcaatggg
tttccagcaacctccattcacggtgacagaacacaacaggaaagagaagtggcactgaaa
gccttcaagagtgggagaacaccgattttggttgcaaccgatgtagcagcacgtggcctt
gacattccccacgtggctcatgtggtcaacttcgatttaccaaatgacattgatgactat
gtccaccgtattggacgaacaggacgtgctggcaagtcaggactagcaactgccttcttc
aacgatggcaacacctcactggccagaccgctcgctgagctgatgcaagaagctaaccag
gaagtccctgcgtggctcacacggtatgcatcacggtcttcttttggtggtggtaagaac
cggaggtctggtggtcggtttggtggccgtgactttagaagggaagggtctttcggtaga
ggaggtggtggaggaggaggatatgggggcggaggaggctatggtggcggaggaggatat
ggtggcggaggaggctatggcggtggatatagtggtgctccaagtggaggatatggcgga
gaacctccaagtgcttgggactaa
DBGET
integrated database retrieval system
