Arabidopsis lyrata (lyrate rockcress): 9316561
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Entry
9316561 CDS
T01578
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03015
mRNA surveillance pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
9316561
09123 Folding, sorting and degradation
03018 RNA degradation
9316561
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9316561
03041 Spliceosome [BR:
aly03041
]
9316561
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
9316561
mRNA cycle factors
Stress granule specific factors
9316561
Spliceosome [BR:
aly03041
]
Complex C
Other components
Complex C specific factors
9316561
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_occluded
RRM_10
RBD_DEAH11
RRM_RdRP1_2
RRM_Nup35
RBD_DGKtheta
BRAP2
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
9316561
NCBI-ProteinID:
XP_002878680
UniProt:
D7LFA3
LinkDB
All DBs
Position
Unknown
AA seq
655 aa
AA seq
DB search
MAQVQAPSSHSPPPVVNDGSVTASATLGIGGGDGVNHGALCSLYVGDLDFNVTDSQLYDY
FTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTEDAEKAMQKLNYSTLNGKMIRITYSSRD
SSARRSGVGNLFVKNLDKSVDNKTLHETFSGCGTIVSCKVAADHMGQSRGYGFVQFDTED
SAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEVTTDDELKTTF
GQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSE
RELELSRRYEQGSSDAGNKFDGLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSG
TSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQMRPAFI
PGVGPRMPIFPGGAPGLGQQIFYGQGSPPIIPHQPGFGYQPQLVPGLRPSFFPMMQPGQQ
GPRPGGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRYPPGGRNMPDGPMLGGMVPVAYD
MNGMPIAQPMSAGQLATSLANATPAQQRTLLGESLYPLVDQIEHENAAKVTGMLLEMDQT
EVLHLLESPEALNAKVSEALDVLRNVNQPSTQVSEGNKSGSPSDLMASLSINDHF
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggctcaggttcaagctccttcttcacattctcctcctccggttgttaacgacgggtcg
gtgacggcttctgctacacttggaatcggcggcggagatggagtcaatcacggtgctctt
tgttctctttatgttggagatctggatttcaatgttaccgattctcagctttatgactat
ttcaccgaggtttgtcaggtcgtatctgttcgtgtttgtcgtgacgctgctaccaatact
tctcttggttatggttatgtcaactacagcaacaccgaagatgcggaaaaggcaatgcag
aagttgaactatagtactctcaatgggaagatgattcggattacttactcgtctcgtgac
tcttctgctcgtagaagtggtgttgggaatttgtttgtaaagaatttggataagtcagtt
gacaacaaaactctgcacgagacgttttccgggtgtgggactattgtgtcctgtaaggtt
gctgctgatcatatgggtcagtctagaggatatgggtttgtgcagtttgatactgaggat
tcagctaagaatgctattgagaagctgaatggcaaagtgttgaatgacaaacagattttt
gttggaccttttcttcgtaaggaggaaagagagtctgctgctgataagatgaagtttacc
aatgtttatgtgaagaatctgtcggaggtgactactgatgatgagttgaagactactttt
ggtcagtatggtagtatttcgagcgctgtggttatgagggacggagatgggaaatccagg
tgttttggatttgtcaactttgagaatcctgaagatgcggctcgtgctgttgaagctctc
aacggaaagaagtttgatgataaggagtggtatgttggtaaagctcagaagaaatctgag
agggaacttgagttgagccgaagatatgaacaaggctcaagtgatgcaggaaacaagttt
gatgggttgaatttatatgttaaaaaccttgatgataccgttaccgatgagaagttgcgt
gagttgtttgctgaatttggtacaattacttcttgcaaggttatgcgtgaccctagtggt
acaagcaaaggatcaggatttgttgccttctctgctgccagtgaagcttcgagagtgctg
aatgaaatgaatggtaaaatggttggtggcaaaccgttgtatgtcgctcttgcacagagg
aaagaagaaagaagggccaagttgcaggctcagttttctcaaatgagacctgcttttatc
cctggtgtgggccctcgaatgccaatatttccaggtggtgctccaggtcttggacaacag
atcttttacggtcaagggtctccaccaatcatccctcaccagcctggatttggttatcag
cctcagctggttcctggattgagaccatcctttttcccgatgatgcagcctggtcagcaa
ggtccacgaccaggtggcaggcggtcaggcgatggacccatgcgccatcagcatcagcag
ccaatgccttatatgcagccacagatgatgccaagaggacgcgggtaccgttaccctcct
ggtggtagaaacatgcctgacggtccaatgctaggaggcatggttccagttgcttatgac
atgaatggaatgcctattgctcagcctatgtctgctggtcaattggctacttcccttgct
aatgctacacctgctcaacagagaactcttcttggtgagagtctatacccattagtggac
cagatagagcatgagaacgctgcgaaagtgaccggtatgcttctggaaatggatcagacc
gaggttttgcatctgctcgagtcaccagaggctctaaatgccaaagtttcagaggcattg
gatgtgttgagaaatgtgaaccagccatcaacacaggtgagtgaaggcaacaaaagtgga
agcccaagtgatctcatggcttcactttccattaatgatcacttctga
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integrated database retrieval system
