KEGG   Arabidopsis lyrata (lyrate rockcress): 9316946
Entry
9316946           CDS       T01578                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit B
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
aly  Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03030  DNA replication
aly03410  Base excision repair
aly03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    9316946
   03410 Base excision repair
    9316946
   03420 Nucleotide excision repair
    9316946
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:aly03032]
    9316946
   03400 DNA repair and recombination proteins [BR:aly03400]
    9316946
Enzymes [BR:aly01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     9316946
DNA replication proteins [BR:aly03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    9316946
DNA repair and recombination proteins [BR:aly03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      9316946
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2 zf-DNA_Pol DUF6970
Other DBs
NCBI-GeneID: 9316946
NCBI-ProteinID: XP_020883533
LinkDB
Position
Unknown
AA seq 2141 aa
MQKVSAADELETKLGFGLFSQGETRLGWLLTFASSSWEDADTGKTFSCVDLFFVTQDGSS
FKTKYKFRPYLYAATKDNMELEVEAYLRRRYQTQVADIQIVHKEDLDLKNHLSGLQKKYL
KVSFDTVQQLVEVKRDLLHIVERNLAKFDAFEAYESILAGKREQRPQDCLDSVVDLREYD
VPYHVRFAIDNDVRSGQWYNVSISSTDVILEKRTDLLQRAEVRVCAFDIETVKLPLKFPD
AESDQIMMISYMVDGQGFLITNRECVGKDIEDLEYTPKPEFEGYFKVTNVNNEVELLRKW
FSHMQELKPGIYVTYNGDFFDWPFIERRASHHGIKMNEELGFRCDHNQGECRAKFVCHLD
CFSWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRFAMEKPQTMASYSVSDAVAT
YYLYMTYVHPFVFSLATIIPMVPDEVLRKGSGTLCEMLLMVEAYKANVVCPNKNQADPEK
FYQGKLLESETYIGGHVECLQSGVFRSDIPTSFKLEASAYQQLIDNLGRDLEYAITVEGK
MRMDSISNYDEVKDVIRGKVEKLRDDPIREEGPLIYHLDVAAMYPNIILTNRLQPPSIVT
DEVCTACDFNGLEKTCLRKLEWVWRGVTFKGNKSEYYHLKKQIESESVDAGANMQSSKPF
LDLPKVEQQSKLKERLKKYCQKAYSRVLDKPITEVREAGICMRENPFYVDTVRSFRDRRY
EYKTLNKVWKGKLSEAKASGNSIKIQEAHDMVVVYDSLQLAHKCILNSFYGYVMRKGARW
YSMEMAGVVTYTGAKIIQNARLLIERIGKPLELDTDGIWCALPGSFPENFTFKTIDMKKF
TISYPCVILNVDVAKNNSNDQYQTLVDPVRKTYNSRSECSIEFEVDGPYKAMIIPASKEE
GILIKKRYVVFNHDGTIAELKGFEMKRRGELKLIKVFQAELFDKFLHGSTLEECYSAVAA
VANRWLDLLEDQGKDIADSELLDYISESSTMSKSLADYGQQKSCAVTTAKRLADFLGDTM
VKDKGLRCQYIVACEPEGTPVSERAVPVAIFQTDDPEKKFYLXKWCKISSYDGIRSIIDW
MYYKQRLHSAIQKVITIPAAMQKVANPVPRVRHPHWLEKKVCDKFRQGKIVDMFSSANKD
GVLDKSHLTTQDNALADXEDFCKENRPSVKGPKPVARSYEVDRNHSXGXAARDWDPEFHD
ISFQNADKNVDYQGWLELEKRKWKMSLKKKKKRRFDDLKPCNQIDAHKINKKVCKGTAGV
GSYFRRPEEALTSSYLQIIQLVQSPQSGQFFAWVVVEGLMLKIPLTIPRVFYINSKASIA
ENFTGKCINKILPHGKPCYNLMEVNIQEDQFKKESKKLAALLADPEIEGIYETKMPLEFS
AICQIGCVCKIEDTAKHRNTQDGWKLGELHRKTTTECRYLENSIPLVYLYHSTSTGRAIY
VLYCHASKLMSVVVVNPYGDKELLSSALERQFRDSCQELSPEPFSWDGILFQVDYVDHPE
AAKKIIQKALCEYREENCGPTVAVIECPDFNTMKEGIKALDDFPCVRIPFNDDDNSYQPV
SWQRPAAKIAVFRCASAFQWLDRRIAQSRYAHVPLGNFGRDWLTFTLDIFLSRALRDQQQ
VLWVSDNGVPDLGDINNEETFLADEVQQTSLVFPGAYRKVSVELKVHRLAVNALLKSDLV
SEMEGGGFLGFEQGVNSRGSSLNDNGSFDENNGCAQAFRVLKQLIKRCLHDARNSGNIYA
DSILQHLSWWLCSPSSKLHDPALHLMLHKVMQKVFALLLTDLRRLGAIIIYADFSKIVID
TGKSDLSAAKAYCESLLTVMGSRDIFELILLEPVHYWHSLLFMDQHNYAGIRATGDEISG
DEVTIEPKWSVARHLPEYIQKDFIIIVATFIFGPWKFSLEKKSGSAESLEAEMVEYLKEQ
IGTRFITMIVEKIGNIRSHMKEINVSDASWVSGQAPKGDNTFEFIQIITAVLVLDQNVQQ
DVLVMRKSLLKYIKVKECAAEAGFIDPGPSFILPNVACSNCGAYRDLDLCRDPALLTEKE
WSCADPQCGKIYDKEQIENSLVQMVRQRERMYQLQDLVCDRCNQVKAAHLTEQCECSGSF
RCKESGSDFHKRMEIFLDIAKRLKFRLLEECISWILFATSC
NT seq 6426 nt   +upstreamnt  +downstreamnt
atgcagaaagtttcagccgcagatgaactcgaaactaaacttggatttgggctcttctcc
caaggggaaacgcgcctcgggtggctactcacatttgcatcatcatcttgggaagatgcc
gatactgggaaaacctttagttgtgtggaccttttctttgtcactcaggacggctcttct
tttaagactaagtacaagttccgcccttacttgtatgccgccaccaaagacaatatggaa
ctggaagttgaagcctacttgagacgccgatatcaaacacaagttgctgatattcagatt
gttcacaaagaagatcttgatcttaaaaatcatctatctggcctgcaaaaaaaatatctc
aaagtatcatttgacactgtgcaacaattggtggaagtcaagagggatctgttgcatatt
gtcgaacgaaacctcgcaaaatttgatgcatttgaagcatacgaatccatattggctgga
aaacgagaacaacgtcctcaagactgcttagactctgtggtggacctccgcgagtacgat
gttccttatcatgtccgatttgcaattgataatgatgtgcgtagtgggcaatggtacaat
gtcagtatttccagcactgatgtcatactagagaagaggacggatcttctccaacgcgca
gaagttcgcgtttgtgcattcgatatagagacagtaaagcttccattgaagttcccggat
gctgaatctgatcaaattatgatgatatcctacatggttgatgggcaaggttttctaatt
actaacagagagtgtgttggcaaagacatagaagatctggaatatacacccaaaccagag
tttgaagggtatttcaaagtcacgaatgttaacaacgaggttgaactcctccgaaaatgg
ttttctcatatgcaagagttgaaacctggtatttatgttacatacaacggtgactttttt
gactggccatttatagaacggagagcatcgcatcatgggatcaaaatgaacgaggagtta
ggattccgttgtgatcataatcaaggtgaatgtcgagctaagtttgtgtgccatttggat
tgtttttcttgggtgaaacgtgatagctatcttcctcagggaagccatggtctgaaggct
gttacaaaggcaaaactgggttacgatccactggaagtgaatcctgaggacatggttcgg
tttgcaatggaaaagccacagacaatggcctcctactctgtctctgatgctgttgcaact
tactacctatacatgacatatgtccatccgttcgttttttctctcgcaactatcattcca
atggtccctgatgaggttttacgcaaagggagtggcaccctttgtgaaatgcttttgatg
gttgaggcttacaaggcaaatgttgtatgtcccaacaaaaatcaagctgaccctgagaag
ttctaccaaggtaaacttcttgaaagtgagacatatattggtggccatgtagagtgcctc
caaagtggtgttttcagatctgacattccaaccagttttaagctcgaggcatccgcatac
cagcaactgatcgataaccttggtcgggatctggaatatgctatcactgttgaaggaaaa
atgagaatggattcaatttccaattatgatgaagtaaaggacgtaatcagaggaaaggtc
gagaagttacgggatgatccaatacgtgaagaggggcctcttatttatcaccttgatgtt
gcggcgatgtatccaaatatcatcttaacaaacaggcttcagccaccatcaatagttacg
gatgaggtttgcacagcatgtgatttcaacggcctggaaaagacctgtcttagaaaactt
gaatgggtttggcgtggggtgacattcaagggaaataaaagtgaatattaccatctgaag
aagcagattgagtctgaatctgttgatgctggtgcaaatatgcagtcttcaaaacctttt
cttgatctgccaaaggtggaacaacaatccaaattaaaagaacgattgaaaaaatactgt
caaaaggcatatagccgagtacttgacaagccaatcactgaagttcgcgaggctgggata
tgcatgagagaaaacccgttctatgtggacactgtgcgcagctttcgagataggaggtat
gaatacaaaacacttaacaaggtctggaagggaaagttgtccgaggccaaggcaagtggc
aattcaatcaagatccaggaagcacatgacatggtagtggtttacgattccttgcagcta
gctcataagtgtatacttaattccttctatggatatgtcatgcgaaagggcgcaagatgg
tactccatggaaatggctggtgtagttacttatactggagccaaaatcatccagaatgca
cgtttgcttattgagcgaattgggaaaccacttgagctggatacagatggtatatggtgt
gctctccctggatcttttcctgagaactttacttttaaaacgatagacatgaagaaattc
accatctcgtatccgtgtgtaatacttaatgttgatgtggcgaagaataattcaaatgac
caatatcagactcttgtagatcctgtacgaaagacatataattcacgtagcgaatgctca
attgaatttgaagtggatggaccgtacaaggcaatgattattcctgcatcaaaggaagag
ggaatcttaattaagaagcggtatgtagttttcaatcatgacggaaccatagcagaactc
aaggggtttgagatgaagcgtagaggagagctgaaactcattaaagttttccaagccgag
ctatttgacaaatttctgcatggatcaactcttgaagagtgttattctgctgttgcagct
gttgcaaatcgttggcttgacctactcgaggatcaaggaaaagatattgccgatagtgaa
ttgctagattatatatcagaatcaagcactatgagcaaatcgttagcagattatggtcaa
caaaagtcatgtgcagtgaccacagcaaaacgcctggctgattttcttggtgatacaatg
gtcaaagataaaggactgcgctgccaatacatcgttgcttgtgaaccagaggggacaccc
gtaagtgaacgtgctgtccctgttgccatatttcaaacggatgatcctgagaaaaagttt
tatctgtaaaaatggtgcaagatatcatcatatgatggaatccgttcaattattgactgg
atgtattacaagcagcgccttcattcagctattcaaaaagttattaccattcctgctgca
atgcagaaggtggcaaatcctgtacctagggtacgtcatcctcactggctcgagaaaaag
gtctgtgacaaatttcgtcagggaaaaatagtggatatgtttagctcagcaaataaagat
ggtgtcttggacaaaagtcatttgacaacccaagataatgcactggcggatnttgaggat
ttttgcaaagaaaacagaccttccgtaaaagggccaaagccagttgcgcgttcgtatgaa
gtcgatagaaatcactcttgagggtaagcagcaagagattgggatccagagttccatgat
atctcatttcagaacgctgacaagaatgtagattaccaaggatggcttgaactggaaaaa
agaaaatggaaaatgagtctaaagaagaagaaaaaaagaaggtttgatgatctaaagcct
tgtaatcagattgatgctcacaagataaataaaaaagtctgtaagggaacagcaggtgta
ggctcatactttaggaggcctgaagaagctttgactagttcatatttgcagataatacag
ttggtccaaagtccacagagcgggcaattttttgcttgggttgttgtggaaggattgatg
cttaagatcccattgacgatcccaagggtgttttacattaattccaaagcttctatagct
gaaaacttcacgggaaagtgtatcaacaagattcttcctcatggaaagccttgttataat
ttgatggaggtcaatattcaggaagatcaatttaaaaaagaaagcaaaaagcttgccgct
ctacttgcagaccccgaaattgagggcatatatgaaactaagatgcctctggagtttagt
gctatatgtcagattggatgtgtatgcaaaattgaagacacggccaaacaccgtaacacc
caagatggatggaaacttggtgaacttcataggaaaactacaactgaatgtcgctacttg
gagaattcaattccacttgtttatttgtatcacagcacctcaacaggtcgtgctatttat
gttttatattgtcatgcttcgaagcttatgtctgttgtggtagtcaatccttatggtgac
aaggaattattatcatctgccctagagagacagtttagagatagctgccaagaattgtca
cctgagccattttcttgggatggtatccttttccaggtcgactatgttgaccatccagaa
gccgccaagaaaattatacaaaaagcgctctgtgaatacagagaagaaaattgtggacca
actgtggcagtcattgaatgccctgactttaacaccatgaaggaaggtataaaggccctg
gatgatttcccatgtgtgaggattcccttcaacgacgatgacaatagttatcagcctgtc
tcctggcaacgtcccgcagcaaaaatagcagtgttccgttgtgcttcagcatttcagtgg
ttggatcggaggattgcccagtcaagatacgcccatgtgcctctggggaattttggacgt
gattggttaacattcacactagatatcttcctgtccagggcactccgtgaccagcaacag
gtcctttgggtgtcagataatggtgttccagaccttggagatataaacaatgaagagaca
tttctagctgatgaggtacaacagacaagtttggtattccctggagcgtacagaaaagtg
tctgtggagttaaaggtccatagattagctgttaatgcccttctgaaaagtgacctggtg
agtgaaatggaaggaggcggctttttgggatttgaacagggtgtgaattctaggggaagt
agtttaaacgataatggcagttttgatgagaataatggatgtgctcaagcatttcgtgtc
ctgaaacaattgatcaagcgttgcttgcatgatgcgcgtaattctggcaatatatatgct
gattccattttgcaacatctgtcttggtggctctgcagcccttcctcgaagcttcacgat
ccagctctccatctcatgcttcacaaggtcatgcaaaaggtgtttgcgctgcttttgact
gatttgcggaggttaggtgctataataatatacgcagacttctcaaagatcgttatcgac
acagggaaatctgatctatctgctgctaaggcttattgtgaaagcttgctcacagtgatg
gggagtagagatatctttgagttgatcttgcttgagccggttcactactggcactcgtta
cttttcatggaccagcataactacgctggtatccgagctaccggagatgaaatttctggt
gacgaagtgactattgaaccaaagtggagcgttgcacggcatttacccgagtatattcag
aaggattttatcataattgttgccacgtttatatttggcccctggaaattttcattagag
aaaaaaagtggcagtgcagagagtttagaggcagagatggtagaatatctcaaggaacag
ataggaacccggttcataaccatgattgttgagaaaattggtaatatcaggtcacacatg
aaggagataaacgtgtcagatgcatcttgggtttctggtcaagctcccaaaggagataac
acgttcgaatttatacaaattattactgctgttctggttcttgatcaaaacgttcagcaa
gatgttctggtaatgagaaagagtctgttgaagtacattaaagtaaaagaatgcgctgct
gaagccggatttattgatcctgggccatccttcatcttacctaacgtggcttgcagcaac
tgcggtgcctacagagacctagatttatgcagagacccagctctcttaacagagaaagaa
tggtcatgtgcggatccgcaatgcgggaagatatatgacaaagagcagatagagaatagc
cttgtccagatggtgagacagagggagagaatgtaccagttgcaggatctagtgtgcgat
aggtgcaatcaggtgaaagccgctcatttgacagagcagtgtgagtgttctggatccttt
agatgcaaggagagtggttcagatttccacaagaggatggagattttcttggatatagca
aagcgcctgaagtttagactgctagaagaatgcatctcctggattttatttgccaccagc
tgttga

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