Arabidopsis lyrata (lyrate rockcress): 9317024
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Entry
9317024 CDS
T01578
Name
(RefSeq) chaperonin 60 subunit alpha 1, chloroplastic
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9317024
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9317024
03110 Chaperones and folding catalysts [BR:
aly03110
]
9317024
03029 Mitochondrial biogenesis [BR:
aly03029
]
9317024
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aly04147
]
9317024
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
9317024
Messenger RNA biogenesis [BR:
aly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
9317024
Chaperones and folding catalysts [BR:
aly03110
]
Heat shock proteins
HSP60 / Chaperonin
9317024
Mitochondrial biogenesis [BR:
aly03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
9317024
Exosome [BR:
aly04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
9317024
Exosomal proteins of other body fluids (saliva and urine)
9317024
Exosomal proteins of breast cancer cells
9317024
Exosomal proteins of colorectal cancer cells
9317024
Exosomal proteins of bladder cancer cells
9317024
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
9317024
NCBI-ProteinID:
XP_002880957
UniProt:
D7LIG5
LinkDB
All DBs
Position
Unknown
AA seq
587 aa
AA seq
DB search
MASANALSSASVLCSSRQSKLGGGNQQQGQRVSYNKRTNRRFSVRANVKEIAFDQHSRAA
LQAGIDKLADCVGLTLGPRGRNVVLDEFGSPKVVNDGVTIARAIELPNAMENAGAALIRE
VASKTNDSAGDGTTTASILAREIIKHGLLSVTSGANPVSLKRGIDKTVQGLIEELQKKAR
PVKGRDDIRAVASISAGNDDLIGSMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEID
RGYISPQFVTNPEKLLAEFENARVLITDQKITAIKDIIPILEKTTQLRAPLLIIAEDVTG
EALATLVVNKLRGVLNVVAVKAPGFGERRKAMLQDIAILTGAEYLAMDMSLLVENATIDQ
LGIARKVTISKDSTTLIADAASKDELQARIAQLKKELSETDSVYDSEKLAERIAKLSGGV
AVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVIPAIKETFEDA
DERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSEWEQGYNAMTDTYENLLEAGVI
DPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAAPEGLMV
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgctaacgctctctcttccgcctccgtcctctgctcttcccgtcagagtaag
ttgggaggaggaaatcagcagcaaggtcagagagttagctacaacaagaggacaaacaga
cgttttagcgttagagcaaatgtaaaagaaatagcttttgaccagcactctagagctgct
cttcaagctggtattgataagcttgctgattgtgttggtctcactcttggtcctagaggg
aggaatgttgtgttggatgaatttggaagtcctaaggtggtgaatgatggtgtcaccatt
gcaagggctattgagttacctaatgccatggaaaatgctggtgctgcgcttattcgtgag
gttgcgagtaagactaatgactcggctggtgatgggacaaccactgcgtctatccttgct
cgggagataatcaaacatggattgttgagtgtcacttctggtgcaaatcccgtttctctc
aagaggggaattgataagaccgtgcaaggtctgattgaagagcttcagaagaaagctagg
cctgtgaaaggtcgtgatgacatcagagctgtggcttctatctctgctggaaatgatgac
cttatagggtcaatgattgctgatgccattgacaaagttggacctgatggtgttttgtcc
atcgaatcttcatcctcttttgagaccacggtcgaagttgaagaagggatggagattgac
agaggttacatctcgcctcagtttgttacaaaccctgagaaactactagctgagtttgag
aatgctagggttttgatcactgatcagaagatcactgcaatcaaagacatcatccctatt
ttggagaagaccactcagcttcgtgctccattgttgattattgcagaggatgttacgggt
gaagccttagctacccttgtcgtgaacaagctccgtggtgtcctcaatgtcgttgcagtt
aaagctccaggatttggagaaagaagaaaagccatgcttcaagatattgcaatcttgaca
ggagctgagtacctagccatggacatgagcttgctggttgaaaacgcaaccatagatcaa
ttgggtattgcccgaaaagtcacgattagcaaagattcgactacccttattgcagatgca
gcttccaaggacgaattacaagctcggattgctcagctaaagaaagaactatccgagact
gattctgtgtatgactcagagaagctcgctgagagaatcgctaagctatctggaggtgtt
gctgtcattaaagtcggagcagcaactgaaacggagcttgaggaccgtaagctccgtatc
gaggatgcaaagaatgcaacatttgctgctatcgaggaaggcatagttccaggtggtggt
gctgctttggtgcatctctctactgttattcccgccattaaggagactttcgaggatgct
gatgaacgtttgggagctgatatagtacaaaaggcattgctgtcaccagctgcacttatt
gcccagaacgctggagttgaaggagaagttgttgtggaaaagattatgttcagcgaatgg
gagcaagggtacaacgcgatgactgatacgtatgagaatctgttggaagctggagtgatt
gatcccgcaaaagtgacgagatgtgcgctacagaacgctgcttccgttgcaggaatggta
ctgaccactcaggccattgttgtcgacaagccgaaacccaaggctcctgctgctgctgct
gctcctgagggtctcatggtataa
DBGET
integrated database retrieval system
