Arabidopsis lyrata (lyrate rockcress): 9317102
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Entry
9317102 CDS
T01578
Name
(RefSeq) serine/arginine repetitive matrix protein 1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03013
Nucleocytoplasmic transport
aly03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
9317102
03015 mRNA surveillance pathway
9317102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9317102
03041 Spliceosome [BR:
aly03041
]
9317102
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
9317102
Spliceosome [BR:
aly03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
9317102
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
9317102
NCBI-ProteinID:
XP_002879206
UniProt:
D7LKN8
LinkDB
All DBs
Position
Unknown
AA seq
861 aa
AA seq
DB search
MSGGFFRGTSAEQDTRFSNKQAKLMKSQKFAPELENLVDVTKVKMDVMKPWIATRVTELL
GFEDEVLINFIYGLLDGKVVNGKEIQISLTGFMEKNTGKFMKELWTLLLSAQNNSSGVPQ
QFLDAREAETKKKQEEAIQKADRLANEIERKREGEKKNPEHDILRKIDSGVEHKETNGMD
TKPSRDRLEDGRRADEKNGVKERRRDLIPPRGRDASRSPLRGSRSRSISKTNSGSKSYSG
ERKSRSLSQSSDASISPRKRRLSNSRRRSRSRSLRRSLSPRRRTIHSPYGSRSRSPIRRH
RRHTPEGRRQSPAPSRRRRSPSPPARRRRSPFPPSRRRRSPSPPARRRRSPSPPVRRRRS
PSPPARPRRSPSPPARRRRSPLPFRRRRSPSPPARRRRSPSPLYSRNRSRSPLVKRERSG
SQGRSPSPVARRRDPTGARLPSPPAEQRLPSPPAGQRLPPPLPRRAGLPSPMRVGGSHAA
NHLESPSPRPSSLSPPGRKKVLPSPPVRRRRSLTPAEERVSLSPAGRHEAESLSHVKQGG
STSPARGQGKSSPTRHQKARSPVRRRSPTPVNRRNRRFPSASQSPDDRRKRRSPSSSRSP
SRSRSPPVLHRSPSAYGRKHQRDRRSPGHLSEEQDRVQNSKLLKRTSVPDTDKRKQLPEE
VLEVGRVDHYREQERKSDKLTERRSGHRTHGSQMSPVENSEGKSRPVSGKVKDSEQVEKD
DNSDLDANLSSDSKESSRHRTKDKKRRKNKRSSREEVSSDDNGSSDSDLDDRKEAKRRRK
EEKKTRKEEKKRRREERRRKREERRGGKEKHKNRELSDTSEGEAEARPKNKKGGESDPKR
LEIELRNKALESLKAKKGISH
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcggtttcttccggggtacttccgccgagcaggatactcggttttctaacaag
caagccaaattgatgaagagtcagaaatttgctccggagttggagaatctggtggatgtg
actaaagtgaagatggatgttatgaagccttggattgcgactagagtcactgagcttctt
ggttttgaagatgaagtgctgattaactttatctatggtctgcttgatgggaaggtagtg
aacggtaaggagattcagatatcgctaactggattcatggagaaaaatactggcaagttt
atgaaagaactttggacacttcttctaagcgcacagaataattcaagtggtgttccgcag
cagtttttagatgctagagaagctgaaacaaagaagaaacaggaagaagcaatacaaaaa
gcagatcggttagcaaatgaaatagagaggaagagggagggagaaaagaagaaccctgag
catgatatattgaggaaaatagacagcggcgtagaacacaaggagacaaatggcatggat
acaaaaccttcaagagatcgtctagaggatgggagaagggctgacgagaagaatggtgtg
aaagaaaggagaagggatctgatacctccacgtggcagagatgcatcccgctcacccctt
agggggtcacgttctaggtcaatcagcaaaacaaattcaggctcgaaaagttattctggt
gaacggaaatccaggagcttgtctcaatcatcagatgcctccatctcacctagaaagcgg
agattgtcgaattcaagacgtagatccagatcacgttccttgcgtaggtctctatctcct
cggcgacgtacgatacattctccttatggaagcaggtcacggtcacctattagacgtcac
aggcgacatacgcctgagggacgccgtcaatcaccagccccttcaaggcgtcgccgttct
ccatccccacctgctaggaggcgcaggtcaccattcccaccttctaggaggcgcaggtca
ccatccccacctgctaggaggcgcaggtcaccatcaccacctgttagacggcgtaggtca
ccatcaccacctgctaggccgcgcaggtcaccatcgccccctgctaggcgtcgccgttct
ccactgccctttaggcggcgtaggtctccttcaccgccagctaggcggcgcaggtctcca
tctccactctatagtcgtaacaggtcacggtcaccactggttaagcgggaaaggtctggc
tcacaagggaggtctccgtcaccagtggctaggcgcagggatcccactggggcaagattg
ccttcaccaccggctgagcaaaggttgccttcaccacccgctgggcaaaggttacctcca
ccactccctaggcgtgcaggattaccttcgccaatgagggttggaggatctcatgcagcc
aatcacctggaatcaccatcacccagacccagttcactgtcccctcctggtaggaaaaaa
gtgttaccatctccacctgttagaagacgtaggtcactgacacctgctgaagagcgagtc
tccctgtcaccagctggacgccatgaagcagaatccctttcacatgtcaagcaaggtgga
tctacgtcacctgctaggggtcaaggtaaatcttcccctactcgacatcagaaagcgcgc
tctcctgttcggcgcagatcaccaactcctgtcaaccggcgaaatcgaagatttccatct
gcttcacaatcacctgatgacagacgtaagagacggtctccatcttcgagcaggtctcct
tctaggtctcgatcacctcctgttcttcatagatctccttctgcatatggaagaaaacat
cagagggacagaagatctcctgggcatctatctgaagaacaagatagggttcaaaattcg
aagctgttaaagagaacttcagtgcctgatactgacaagaggaaacaattaccagaggag
gtgctagaagttgggcgtgtcgaccattatagggagcaagagagaaagagtgataagttg
acagagaggcgttccggtcatagaacccatggttcacagatgtccccagtagaaaattca
gaaggaaagagtcggcctgtttctggtaaagtgaaagacagtgagcaggttgagaaagat
gataacagcgacctggatgcaaacctttcctctgattctaaggaaagcagcagacatcga
actaaggataaaaagagaagaaagaataaaaggtcttcgagggaagaagtatcttcagat
gataatggcagttctgattctgacctagatgataggaaggaggctaaaaggaggaggaag
gaggagaagaaaacgagaaaggaggagaagaaacgtaggcgagaggagagacgtcgtaaa
agggaagaacgacgtggtggaaaggagaaacataagaatcgagagctatctgatacttca
gaaggagaagctgaagcccgtcctaagaataaaaaagggggggagtctgatccaaagagg
cttgaaattgagttgcgaaacaaagcactcgagtcattgaaagcaaagaagggcatcagc
cactaa
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