Arabidopsis lyrata (lyrate rockcress): 9317200
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Entry
9317200 CDS
T01578
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aly
Arabidopsis lyrata (lyrate rockcress)
Pathway
aly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9317200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aly03019
]
9317200
03012 Translation factors [BR:
aly03012
]
9317200
Enzymes [BR:
aly01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
9317200
Messenger RNA biogenesis [BR:
aly03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
9317200
Translation factors [BR:
aly03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
9317200
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
Helicase_C
R3H
HA2_C
AAA_22
HA2_N
Ank_5
Ank_2
nSTAND3
AAA_19
ATPase
NPHP3_N
AAA_7
Rad17
T2SSE
Sigma54_activat
AAA_11
Motif
Other DBs
NCBI-GeneID:
9317200
NCBI-ProteinID:
XP_002881133
UniProt:
D7LC90
LinkDB
All DBs
Position
Unknown
AA seq
1299 aa
AA seq
DB search
MGNKRFRSDNAAGKPTSVEATRIWATKVIEDFRASGNEVYTFEHNLSNSERGVIHQMCRK
MGIQSKSSGRGEQRRLSIFKSRHKNGKNNEANEKSNKEKLKCVSFPPGSDAILQELFTHY
PPCDGDTAATSFNKYSGNKGKQGQWKDDFFRKPQISSEEILEKVASLSSRLKKDKALKEI
SKMRSKLPITSYKDAITSAVESNQVILISGETGCGKTTQVPQYLLDHMWSSKRETCKIVC
TQPRRISAMSVSERISCERGESIGENIGYKVRLQSKGGRHSSVVFCTNGILLRVLVGKGS
VSSVSDITHIIVDEIHERDCYSDFMLAIIRDLLPSNPHLRLILMSATLDAERFSGYFGGC
PVVRVPGFTYPVRTLYLEDVLSILKSGGDNHLSSANLSIPDHKLDLTDEDKLALDEAIIL
AWTNDEFDTLLDLVSSRGSHEIYNYQHQSTWLTPLMVFAGKGRISDVCMLLSFGADWNLK
SKDGMTALELAETENQLEAAQIIREHADNFQSNSQQGQQLLDKYMATINPEQVDVSLIQQ
LMRKICGDSEDGAILVFLPGWDDINKTRQRLLDNPFFADSAKFDIICLHSMVPAGEQKKV
FNRPPRGCRKIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKANA
KQREGRAGRCQPGICYHLYSRLRAASMPDFKVPEIKRMPVEELCLQVKILDPNCKTNDFL
QKLLDPPVDQSIANALSILQDIGALTPQEELTELGEKFGHLPVHPLISKMLFFAVLVNCL
DPALTLACAADYKEPFTMPMSPGERQKAAAAKLELASLCGGDSDHLAVVAAFECWKNAKE
RGLSAEFCSQYFVSPSAMKMLDQMRSQLESELKRHGIIPNDISSCSQNSRDPGILRAVLA
VGLYPMVGRLCPAFGNNRRTIVETASGAKVRVHSLSNNFNLSSKKYDESLVVFDEITRGD
GGMHIRNCTVARDLPLLLVSTEIAVAPTGSSDSDDSGEEEEEEEEVGANTNEDRMDIHKE
EKRRGAKMMSSPENSVKLVVDRWLPFRTTALEVAQMYILRERLMASILFKVTHPREHLPP
HLGASMHAIAGILSYDGQAGLSYTPESMGPKHSRNEMYDTGGWEEKPNSFLNSLFWSLSL
KENKHPSHMNRNRQHSFNMAPTEAASIPRQQNNKQRNPKSANNTGSGKKKEKMFVNPTNG
INQPEAASTGKPSKHKSGNSSGASNKKENMPSDQARGNKQHNTVPKEAATPMAKNQSSKK
TKTRSGNNSDSGKKKDMYVPKIDIHKRQREDKAEQKGDA
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atggggaacaagagattcaggtctgataatgcagcagggaaaccaacttccgtcgaagct
actaggatttgggccactaaggtcatcgaagactttagagcctccgggaacgaagtttac
acgtttgagcataatctatcaaatagcgaacgtggagtcattcatcagatgtgccggaaa
atgggtattcaatcgaaaagttctgggcgtggggaacaaaggcgtctttcaatattcaaa
agtaggcataagaatggaaagaacaatgaagccaatgagaaatcaaataaagagaagctc
aaatgtgtgtcatttccgccgggatcagatgctattctgcaggagttatttactcactac
ccaccttgtgacggagataccgctgcaacatcgtttaacaagtactctggtaacaagggt
aaacaaggacaatggaaagatgattttttccggaaaccacagattagcagtgaggagatt
ctagaaaaagtggcatctttgagttctagacttaaaaaggataaagctcttaaggagatc
tctaagatgcggtcgaagcttcccatcacatcctataaagacgcaatcacatctgcagtg
gaatccaatcaggttattctcatttctggtgaaactggttgcgggaaaactactcaggtg
cctcaatatcttttagaccatatgtggtcaagcaaaagagaaacttgcaaaattgtttgc
acccaacctcgtcgaatatccgccatgtcagtttctgaaagaatatcttgtgaaagaggt
gaaagcattggagaaaacattggttacaaggttcgactccaaagcaaaggtggaaggcac
tcatcagttgttttctgcacgaatggcattctcctgagggtgcttgtaggaaaaggctct
gttagcagtgtttccgacataactcacatcattgtggatgaaatccatgaaagagattgc
tattctgatttcatgttggcaataataagggatttacttccatcaaatcctcatctccgt
ttgattctcatgagtgctacacttgatgctgagagattttcgggatattttggaggttgc
ccggttgtccgtgtccctggattcacttatccagtgagaaccttatatttggaggatgtg
ctctctattctgaaatcaggtggagataatcatctaagctctgccaacttgagtatacca
gaccacaagcttgatttgacggatgaagataaacttgctttagatgaagcaatcatcttg
gcttggacaaatgacgagtttgataccctcttagatctagtttcttctagaggaagtcat
gagatctacaattatcagcaccaatcaacctggctaacaccactaatggtctttgctgga
aagggcaggatcagtgatgtctgcatgctcctatcatttggtgcggactggaacttaaag
tctaaagatggtatgactgcgttagaattggctgaaacagagaatcaactagaagctgct
caaataatcagggagcatgcagacaatttccagtctaattctcagcaaggacaacagtta
cttgataaatacatggcgacaatcaacccagagcaggtcgatgtgagtcttatacagcag
ttaatgaggaaaatatgtggcgattcagaagatggtgccattcttgtttttctacctgga
tgggatgatataaataaaacaagacagagattacttgataaccctttcttcgcagatagt
gctaaatttgacattatatgtcttcactcaatggttccagcaggggaacagaagaaagtt
tttaatcgcccccctcgaggttgtcgtaaaatcgtgcttgcgacaaatattgctgaatca
gcagttaccattgatgatgtggtttatgtgatagatagtggccggatgaaggaaaagagc
tatgatccttataataatgtttcaactctccaatcttcttgggtatcaaaagcaaatgca
aaacagcgtgagggtcgagcaggccgctgccaacctggtatttgttatcatctctattct
agacttcgggcagcctctatgccagattttaaagttcctgaaatcaagaggatgccggta
gaagaactctgcttacaggttaagatacttgatccaaattgtaaaacaaatgatttcctt
cagaaactgttggacccgcctgttgatcaaagtattgcaaacgccttaagcatactacag
gatattggggccctgacacctcaggaagagctgacagaactaggagagaaatttggtcat
ctcccagttcatcctctgattagcaaaatgcttttcttcgctgtattagtaaactgtctg
gatccagcacttactctggcatgtgcagcggactacaaggaaccatttactatgcctatg
tcgccaggtgaaagacagaaagctgctgctgcaaaacttgaacttgcatcactttgcgga
ggtgacagtgatcaccttgcagttgttgctgcctttgagtgctggaaaaacgcaaaagaa
agaggtctttcggcagagttttgctctcagtactttgtctctccaagtgctatgaagatg
ttggatcaaatgcgtagccaacttgagtcggaacttaaaagacatgggattattcctaac
gacatttctagttgtagccaaaattcgcgtgatcctggtatactccgtgctgtgctagca
gtaggattgtatcctatggtgggaagattgtgcccagcttttggtaataatcgaagaact
atagtagaaactgctagtggtgccaaagtccgtgtgcattcgctgtcaaacaacttcaac
ttgtcgtctaaaaagtatgatgaatctttagttgttttcgatgagatcactcgtggagat
ggaggcatgcacataagaaactgtactgttgctcgtgatcttcctttgttacttgtctca
acagagatagctgtggctcctacagggagcagtgattctgatgatagtggtgaagaagaa
gaagaggaagaagaagtaggagctaatactaatgaagacagaatggacatacataaagaa
gagaaaaggcgtggagcgaaaatgatgtcttcacctgaaaattcagtcaaattggtagtt
gatcgctggctgcctttcagaaccacagcccttgaagttgctcaaatgtacattttgcgg
gaaagactaatggcgtctattttattcaaggtaacacatccacgggaacatttgccgcct
catctcggagcttctatgcatgcaatagctggtattctctcatatgatggtcaagcagga
ctttcatatacaccggagtctatgggaccaaaacattcaaggaatgagatgtatgatact
ggtggatgggaagagaaaccaaactctttcctcaactctctcttttggtctctgagtttg
aaagagaacaagcatccaagtcacatgaataggaatcggcagcatagtttcaacatggct
ccaacagaagctgcatcaataccgaggcagcaaaacaataagcaaagaaatcccaaatca
gcaaacaatactggttcaggtaagaaaaaagagaagatgtttgttaatcccaccaatggg
atcaaccagcctgaagctgcttctacgggtaagccatcaaagcacaaatcaggcaacagt
tcgggtgcaagtaacaagaaagagaacatgccttctgatcaggcccgcgggaataagcaa
cataacacagttccaaaagaagctgccacaccaatggcgaagaatcaaagcagtaagaaa
acgaagaccaggtcaggcaacaactcggattcgggtaagaagaaagacatgtatgttcca
aagatagatatccacaaaaggcaacgcgaagacaaagcagaacagaagggagatgcatga
DBGET
integrated database retrieval system
